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scnpilot_expt_750_bf_scaffold_824

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_824_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..675)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B7176
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV24713.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain AT
scnpilot_expt_750_bf_scaffold_824_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1007..2008
DNA (1002bp) protein (334aa)
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-] id=12493565 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
periplasmic protease
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus deni
scnpilot_expt_750_bf_scaffold_824_3
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2196..4559
DNA (2364bp) protein (788aa)
Type I site-specific deoxyribonuclease n=1 Tax=Thiocapsa marina 5811 RepID=F9U565_9GAMM rbh
helicase, type I site-specific restriction-modification system restriction subunit Tax=GWA2_Rhodocyclales_65_20_curated
helicase, type I site-specific restriction-modification system restriction subunit
scnpilot_expt_750_bf_scaffold_824_4
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5643..6740
DNA (1098bp) protein (366aa)
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:EGV20289.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EGV20289.1};; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; C
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Thiocapsa marina 5811 RepID=F9U566_9GAMM
scnpilot_expt_750_bf_scaffold_824_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6737..8938
DNA (2202bp) protein (734aa)
Type I restriction-modification system, S subunit n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I6S0_BORPD
type I restriction-modification system subunit S
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:CAP44335.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" sour
scnpilot_expt_750_bf_scaffold_824_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9039..9992
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C110A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97439.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_824_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10444..12303)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037551CD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97438.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_824_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12498..12920)
DNA (423bp) protein (141aa)
twitching motility protein PilT n=1 Tax=Thiobacillus thioparus RepID=UPI000378EA20
PilT protein domain-containing protein; K07062 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
twitching motility protein PilT
scnpilot_expt_750_bf_scaffold_824_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..13171)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361D831
prevent-host-death family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
prevent-host-death family protein
scnpilot_expt_750_bf_scaffold_824_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13261..13515)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B159A
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_824_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13641..14243
DNA (603bp) protein (201aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] Tax=GWE1_Thiobacillus_62_9_curated
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
umuDC operon protein-like protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378691D rbh
scnpilot_expt_750_bf_scaffold_824_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14415..15374
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EB2DE rbh
endonuclease Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
putative endonuclease
scnpilot_expt_750_bf_scaffold_824_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15407..18454
DNA (3048bp) protein (1016aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIU2_THIDA rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_expt_750_bf_scaffold_824_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18558..19175
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363CDE2 rbh
nitroreductase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nitroreductase
scnpilot_expt_750_bf_scaffold_824_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19285..19878
DNA (594bp) protein (198aa)
Uncharacterized protein id=1324492 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19922..20173
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003690C6F
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_824_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20294..20782
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371C6BA rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20854..21471)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367368D rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21594..22298
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036862F2 rbh
short-chain dehydrogenase/reductase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
short-chain dehydrogenase/reductase
scnpilot_expt_750_bf_scaffold_824_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22327..22950)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003691171 rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23008..23277)
DNA (270bp) protein (90aa)
hypothetical protein; K08982 putative membrane protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein; K08982 putative membrane protein id=12493153 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23390..23779)
DNA (390bp) protein (130aa)
hypothetical protein id=12493152 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23948..24490)
DNA (543bp) protein (181aa)
hypothetical protein id=12493151 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24487..25449)
DNA (963bp) protein (321aa)
ErfK/YbiS/YcfS/YnhG family protein id=12493150 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ErfK/YbiS/YcfS/YnhG family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25528..25833)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003821E6E
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_824_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25833..26099)
DNA (267bp) protein (89aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12493149 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
translation initiation factor IF-1
scnpilot_expt_750_bf_scaffold_824_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26406..27500)
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DDF13 rbh
small-conductance mechanosensitive channel protein
Small-conductance mechanosensitive channel protein {ECO:0000313|EMBL:AAZ97415.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillu
scnpilot_expt_750_bf_scaffold_824_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28091..31369
DNA (3279bp) protein (1093aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003820B7A rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
scnpilot_expt_750_bf_scaffold_824_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31454..31723
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361B128
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_824_30
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31720..32043
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037174E7
Uncharacterized protein {ECO:0000313|EMBL:GAO36891.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp.
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy