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scnpilot_expt_750_bf_scaffold_2030

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2030_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..508
DNA (507bp) protein (169aa)
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor id=12493247 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor Tax=GWE1_Thiobacillus_62_9_curated
carbamoyl-phosphate synthase L chain, ATP-binding
scnpilot_expt_750_bf_scaffold_2030_trna_1
unknown

Not on your lists

563..636
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2030_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

693..1277
DNA (585bp) protein (195aa)
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator id=12493246 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
slmA; nucleoid occlusion protein
scnpilot_expt_750_bf_scaffold_2030_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1265..2029)
DNA (765bp) protein (255aa)
adenylyltransferase id=12493245 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
adenylyltransferase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
adenylyltransferase
scnpilot_expt_750_bf_scaffold_2030_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2045..2440)
DNA (396bp) protein (132aa)
hypothetical protein id=12493244 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2030_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2525..3940)
DNA (1416bp) protein (472aa)
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=12493243 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
peptidase S41A, protease (EC:3.4.21.102)
scnpilot_expt_750_bf_scaffold_2030_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3942..5189)
DNA (1248bp) protein (416aa)
M23 family peptidase id=12493242 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
M23 family peptidase Tax=GWE1_Thiobacillus_62_9_curated
M23 family peptidase
scnpilot_expt_750_bf_scaffold_2030_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5219..6760)
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] id=12493241 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=GWE1_Thiobacillus_62_9_curated
phosphoglyceromutase (EC:5.4.2.1)
scnpilot_expt_750_bf_scaffold_2030_8
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7014..9893)
DNA (2880bp) protein (960aa)
cusA; RND family outer membrane copper/silver/drug transport protein id=12493239 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cusA; RND family outer membrane copper/silver/drug transport protein Tax=RBG_16_Betaproteobacteria_56_24_curated
cusA; RND family outer membrane copper/silver/drug transport protein
scnpilot_expt_750_bf_scaffold_2030_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10276..11592)
DNA (1317bp) protein (439aa)
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493238 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
heavy metal efflux system protein
scnpilot_expt_750_bf_scaffold_2030_10
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11651..11941)
DNA (291bp) protein (97aa)
copper-exporting ATPase (EC:3.6.3.4) id=12493237 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
scnpilot_expt_750_bf_scaffold_2030_11
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12041..12976)
DNA (936bp) protein (312aa)
aniA; multicopper oxidase type 1; K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] id=12493236 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
copper-containing nitrite reductase (EC:1.7.2.1)
Putative copper-containing nitrite reductase {ECO:0000313|EMBL:CAL63352.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CAL63352.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
scnpilot_expt_750_bf_scaffold_2030_12
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12993..13385)
DNA (393bp) protein (131aa)
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III id=12493235 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c, class IC:cytochrome c, class I
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" sou
scnpilot_expt_750_bf_scaffold_2030_13
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13388..13714)
DNA (327bp) protein (109aa)
cytochrome c, class I id=12493234 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europ
Displaying 14 items

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