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scnpilot_expt_750_bf_scaffold_2105

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2105_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1122)
DNA (1122bp) protein (374aa)
heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA id=12493410 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cation transporter {ECO:0000313|EMBL:KJZ64540.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
cation transporter
scnpilot_expt_750_bf_scaffold_2105_2
Pseudomonas sp. GM48, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1119..2609)
DNA (1491bp) protein (497aa)
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493409 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
secretion protein HlyD
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJM62847.1}; Flags: Precursor;; TaxID=1144330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Ps
scnpilot_expt_750_bf_scaffold_2105_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2606..3838)
DNA (1233bp) protein (411aa)
CzcC family heavy metal RND efflux outer membrane protein id=12493408 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
CzcC family heavy metal RND efflux outer membrane protein
Heavy metal RND efflux outer membrane protein, CzcC family {ECO:0000313|EMBL:AAZ97288.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydr
scnpilot_expt_750_bf_scaffold_2105_4
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4754..4936
DNA (183bp) protein (61aa)
YcfA family protein id=12493405 bin=THIO_HI species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
YcfA family protein {ECO:0000313|EMBL:AEJ01301.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (st
scnpilot_expt_750_bf_scaffold_2105_5
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4950..5339
DNA (390bp) protein (130aa)
hypothetical protein id=12493404 bin=THIO_HI species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein family UPF0150 {ECO:0000313|EMBL:AEJ01300.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="N
scnpilot_expt_750_bf_scaffold_2105_trna_3
unknown

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comp(5455..5527)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2105_trna_2
unknown

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comp(5568..5641)
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2105_trna_1
unknown

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comp(5681..5761)
DNA (81bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2105_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5900..6754
DNA (855bp) protein (285aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD {ECO:0000255|HAMAP-Rule:MF_01576}; Includes:; Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576};; Includ
methenyltetrahydrofolate cyclohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI0003648A7F
scnpilot_expt_750_bf_scaffold_2105_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6925..7683)
DNA (759bp) protein (253aa)
HAD family hydrolase id=12495481 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
HAD family hydrolase Tax=GWE1_Thiobacillus_62_9_curated
HAD family hydrolase
scnpilot_expt_750_bf_scaffold_2105_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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7775..8194
DNA (420bp) protein (140aa)
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein id=12495480 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TraR/DksA family transcriptional regulator
scnpilot_expt_750_bf_scaffold_2105_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8268..8711
DNA (444bp) protein (148aa)
hypothetical protein id=12495479 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96645.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_2105_10
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8753..8989)
DNA (237bp) protein (79aa)
hypothetical protein id=12495478 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWC2_Geobacteraceae_55_20_curated
scnpilot_expt_750_bf_scaffold_2105_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9275..9943
DNA (669bp) protein (223aa)
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=12495477 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
winged helix family two component transcriptional regulator Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
winged helix family two component transcriptional regulator
scnpilot_expt_750_bf_scaffold_2105_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9940..11091
DNA (1152bp) protein (384aa)
two component transcriptional regulator, sensor histidine kinase id=12495476 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
two component transcriptional regulator, sensor histidine kinase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
HAMP domain protein
Displaying 15 items

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