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scnpilot_expt_750_bf_scaffold_2373

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2373_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..125)
DNA (123bp) protein (41aa)
elongation factor Tu (EC:3.6.5.3)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Elongation factor Tu n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1DAQ3_LARHH
scnpilot_expt_750_bf_scaffold_2373_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151..2241)
DNA (2091bp) protein (697aa)
elongation factor G n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4BF9 rbh
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G Tax=GWE1_Thiobacillus_62_9_curated
translation elongation factor 2 (EF-2/EF-G)
scnpilot_expt_750_bf_scaffold_2373_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2337..2672)
DNA (336bp) protein (112aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=12498643 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=GWE1_Thiobacillus_62_9_curated
30S ribosomal protein S7
scnpilot_expt_750_bf_scaffold_2373_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2738..3115)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS12_THIDA
rpsL; 30S ribosomal protein S12
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_750_bf_scaffold_2373_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3283..5775)
DNA (2493bp) protein (831aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=GWE1_Thiobacillus_62_9_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Thiobacillus thioparus RepID=UPI00037D443B
scnpilot_expt_750_bf_scaffold_2373_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6140..7525)
DNA (1386bp) protein (462aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=12495329 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
scnpilot_expt_750_bf_scaffold_2373_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7607..8551)
DNA (945bp) protein (315aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=12495330 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
scnpilot_expt_750_bf_scaffold_2373_8
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9051..11621
DNA (2571bp) protein (857aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZFZ2_9XANT rbh
Uncharacterized protein {ECO:0000313|EMBL:ETC89470.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortor
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_2373_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11790..12170)
DNA (381bp) protein (127aa)
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 id=12495331 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplL; 50S ribosomal protein L7/L12
scnpilot_expt_750_bf_scaffold_2373_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12242..12763)
DNA (522bp) protein (174aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=12495332 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplJ; 50S ribosomal protein L10
scnpilot_expt_750_bf_scaffold_2373_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13093..13788)
DNA (696bp) protein (232aa)
50S ribosomal protein L1P; K02863 large subunit ribosomal protein L1 id=12495333 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
50S ribosomal protein L1P; K02863 large subunit ribosomal protein L1 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S ribosomal protein L1
scnpilot_expt_750_bf_scaffold_2373_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13790..14221)
DNA (432bp) protein (144aa)
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12495334 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplK; 50S ribosomal protein L11
scnpilot_expt_750_bf_scaffold_2373_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14349..14876)
DNA (528bp) protein (176aa)
transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG id=12495335 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
transcription antitermination protein nusG
scnpilot_expt_750_bf_scaffold_2373_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14879..15226)
DNA (348bp) protein (116aa)
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=12495336 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
secE; preprotein translocase subunit SecE
scnpilot_expt_750_bf_scaffold_2373_trna_1
unknown

Not on your lists

comp(15259..15331)
DNA (73bp)
transferRNA
Displaying 15 items

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