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scnpilot_expt_750_bf_scaffold_2552

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2552_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..2422)
DNA (2421bp) protein (807aa)
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5); K01144 exodeoxyribonuclease V [EC:3.1.11.5] id=12495255 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5)
Uncharacterized protein {ECO:0000313|EMBL:AAZ95987.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_2552_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2428..2751)
DNA (324bp) protein (108aa)
7Fe ferredoxin; K05524 ferredoxin id=12495254 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
7Fe ferredoxin; K05524 ferredoxin Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
7Fe ferredoxin
scnpilot_expt_750_bf_scaffold_2552_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2912..3238
DNA (327bp) protein (109aa)
thioredoxin; K03671 thioredoxin 1 id=12495253 bin=THIO_HI species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
thioredoxin; K03671 thioredoxin 1 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
thioredoxin
scnpilot_expt_750_bf_scaffold_2552_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3346..4524
DNA (1179bp) protein (393aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=292415 specie
rho; transcription termination factor Rho; K03628 transcription termination factor Rho id=12495252 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rho; transcription termination factor Rho
scnpilot_expt_750_bf_scaffold_2552_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4621..4827
DNA (207bp) protein (69aa)
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 id=12495251 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpmE; 50S ribosomal protein L31
scnpilot_expt_750_bf_scaffold_2552_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4943..6397
DNA (1455bp) protein (485aa)
hypothetical protein id=12495250 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2552_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6354..7949
DNA (1596bp) protein (532aa)
hypothetical protein id=12495249 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2552_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7966..8505
DNA (540bp) protein (180aa)
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] id=12495248 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
molybdenum cofactor guanylyltransferase
scnpilot_expt_750_bf_scaffold_2552_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8502..9251)
DNA (750bp) protein (250aa)
hypothetical protein id=12495247 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2552_10
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9433..9828
DNA (396bp) protein (132aa)
putative ModE family transcriptional regulator; K02019 molybdate transport system regulatory protein id=12495246 bin=THIO_HI species=Halomonas sp. KM-1 genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ModE family transcriptional regulator
ModE family transcriptional regulator {ECO:0000313|EMBL:BAO31290.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuri
scnpilot_expt_750_bf_scaffold_2552_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10064..12079
DNA (2016bp) protein (672aa)
putative TonB-dependent receptor; K02014 iron complex outermembrane recepter protein id=12495245 bin=THIO_HI species=Rubrivivax gelatinosus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative TonB-dependent receptor
Putative TonB-dependent receptor {ECO:0000313|EMBL:BAL95426.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strai
scnpilot_expt_750_bf_scaffold_2552_12
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12079..12681
DNA (603bp) protein (201aa)
nitrogen fixation protein NifQ; K15790 nitrogen fixation protein NifQ id=12495244 bin=THIO_HI species=Cupriavidus sp. WS genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
xanthine and Co dehydrogenase maturation factor
Xanthine and CO dehydrogenase maturation factor {ECO:0000313|EMBL:ABI57268.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicol
Displaying 12 items

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