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scnpilot_expt_750_bf_scaffold_1082

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1082_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..165
DNA (165bp) protein (55aa)
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB id=12493224 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
preprotein translocase subunit SecB
scnpilot_expt_750_bf_scaffold_1082_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182..634
DNA (453bp) protein (151aa)
hypothetical protein id=12493223 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1082_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

631..1617
DNA (987bp) protein (329aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] id=12493222 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
scnpilot_expt_750_bf_scaffold_1082_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1743..2303)
DNA (561bp) protein (187aa)
yfjP_[H]; HhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase id=12493221 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
yfjP_[H]; HhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Tax=GWE1_Thiobacillus_62_9_curated
yfjP_[H]; HhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
scnpilot_expt_750_bf_scaffold_1082_5
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2617..3834
DNA (1218bp) protein (406aa)
acrA; acridine efflux pump protein; K03585 membrane fusion protein id=12493220 bin=THIO_HI species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
acrA; acridine efflux pump protein rbh
Acriflavine resistance protein A {ECO:0000313|EMBL:CAL62512.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminii
scnpilot_expt_750_bf_scaffold_1082_6
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3847..7008
DNA (3162bp) protein (1054aa)
acrD; aminoglycoside/multidrug efflux pump; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=12493219 bin=THIO_HI species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Acriflavine resistance protein B {ECO:0000313|EMBL:CAL62513.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminii
acrD; aminoglycoside/multidrug efflux pump
scnpilot_expt_750_bf_scaffold_1082_7
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7001..8413
DNA (1413bp) protein (471aa)
smeF; outer membrane transport protein involved toxic tolerance id=12493218 bin=THIO_HI species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
smeF; outer membrane transport protein involved toxic tolerance
Outer membrane protein oprM {ECO:0000313|EMBL:CAL62514.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas
scnpilot_expt_750_bf_scaffold_1082_8
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8410..9048
DNA (639bp) protein (213aa)
TetR family transcriptional regulator id=12493217 bin=THIO_HI species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:CAL62515.2}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" s
TetR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1082_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9089..10645)
DNA (1557bp) protein (519aa)
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-] id=12493216 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RNAse G (EC:3.1.4.-)
scnpilot_expt_750_bf_scaffold_1082_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10696..11307)
DNA (612bp) protein (204aa)
maf; Maf-like protein; K06287 septum formation protein id=12493215 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
maf; Maf-like protein; K06287 septum formation protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
maf; Maf-like protein
scnpilot_expt_750_bf_scaffold_1082_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11326..11796)
DNA (471bp) protein (157aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] id=12493214 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1082_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11802..12161)
DNA (360bp) protein (120aa)
Iojap-like protein; K09710 ribosome-associated protein id=12493213 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Iojap-like protein; K09710 ribosome-associated protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Iojap-like protein
scnpilot_expt_750_bf_scaffold_1082_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12158..12808)
DNA (651bp) protein (217aa)
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12493212 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
scnpilot_expt_750_bf_scaffold_1082_14
unknown

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14339..14968
DNA (630bp) protein (210aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1082_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14931..15443)
DNA (513bp) protein (171aa)
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein id=12493209 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein Tax=GWE1_Thiobacillus_62_9_curated
lipoprotein B transmembrane
scnpilot_expt_750_bf_scaffold_1082_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15440..15814)
DNA (375bp) protein (125aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=12493208 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=GWE1_Thiobacillus_62_9_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Suspect SCG annotation. See neighboring gene [scnpilot_expt_750_bf_scaffold_1082_17].
scnpilot_expt_750_bf_scaffold_1082_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16219..17244)
DNA (1026bp) protein (342aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=12493208 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=GWE1_Thiobacillus_62_9_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Displaying 17 items

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