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scnpilot_expt_750_bf_scaffold_1134

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1134_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..170
DNA (168bp) protein (56aa)
putative succinylglutamate desuccinylase; K01175 [EC:3.1.-.-] id=12493271 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative succinylglutamate desuccinylase; K01175 [EC:3.1.-.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
succinylglutamate desuccinylase
scnpilot_expt_750_bf_scaffold_1134_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..1064)
DNA (891bp) protein (297aa)
tyrosine recombinase XerD; K04763 integrase/recombinase XerD id=12493272 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
tyrosine recombinase XerD
scnpilot_expt_750_bf_scaffold_1134_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1045..1515)
DNA (471bp) protein (157aa)
methylated-DNA-(protein)-cysteine S-methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] id=12493273 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
methylated-DNA-(protein)-cysteine S-methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
methylated-DNA-(protein)-cysteine S-methyltransferase
scnpilot_expt_750_bf_scaffold_1134_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1854..2237)
DNA (384bp) protein (128aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplS; 50S ribosomal protein L19
scnpilot_expt_750_bf_scaffold_1134_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2365..3072)
DNA (708bp) protein (236aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=12493276 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
scnpilot_expt_750_bf_scaffold_1134_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3072..3551)
DNA (480bp) protein (160aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM id=12493277 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=GWE1_Thiobacillus_62_9_curated
16S rRNA-processing protein RimM
scnpilot_expt_750_bf_scaffold_1134_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3580..3834)
DNA (255bp) protein (85aa)
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 id=12493278 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
30S ribosomal protein S16
scnpilot_expt_750_bf_scaffold_1134_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3908..5251)
DNA (1344bp) protein (448aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 id=12493279 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydroge
scnpilot_expt_750_bf_scaffold_1134_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5321..6106
DNA (786bp) protein (262aa)
transmembrane protein id=12493280 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transmembrane protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
transmembrane protein
scnpilot_expt_750_bf_scaffold_1134_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..7416
DNA (1299bp) protein (433aa)
transmembrane protein id=12493281 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transmembrane protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
transmembrane protein
scnpilot_expt_750_bf_scaffold_1134_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7516..9231
DNA (1716bp) protein (572aa)
type IV pilus assembly protein, PilB; K02652 type IV pilus assembly protein PilB id=12493282 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Type IV pilus assembly protein, PilB {ECO:0000313|EMBL:AAZ98323.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
type IV pilus assembly protein, PilB
scnpilot_expt_750_bf_scaffold_1134_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9244..10464
DNA (1221bp) protein (407aa)
type II secretion system protein F n=1 Tax=Thiobacillus thioparus RepID=UPI00037135CB rbh
type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=GWE1_Thiobacillus_62_9_curated
type IV pilus assembly protein PilC
scnpilot_expt_750_bf_scaffold_1134_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10464..11315
DNA (852bp) protein (284aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=12493284 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
type 4 prepilin peptidase 1 (EC:3.4.23.43)
scnpilot_expt_750_bf_scaffold_1134_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11315..11923
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] id=12493285 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWE1_Thiobacillus_62_9_curated
dephospho-CoA kinase (EC:2.7.1.24)
scnpilot_expt_750_bf_scaffold_1134_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11976..12731
DNA (756bp) protein (252aa)
hypothetical protein id=12493286 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1134_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12929..13570)
DNA (642bp) protein (214aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6)
id=12493288 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria rbh
scnpilot_expt_750_bf_scaffold_1134_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13666..13851
DNA (186bp) protein (62aa)
L-threonine ammonia-lyase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=12493289 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=292415 species="Bacteria; Proteobacter
Displaying 17 items

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