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scnpilot_expt_750_bf_scaffold_1280

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1280_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..762)
DNA (762bp) protein (254aa)
hypothetical protein; K07102 id=12494079 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07102 Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1280_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

821..3088
DNA (2268bp) protein (756aa)
organic solvent tolerance transmembrane protein; K04744 LPS-assembly protein id=12494080 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
organic solvent tolerance transmembrane protein; K04744 LPS-assembly protein Tax=GWE1_Thiobacillus_62_9_curated
organic solvent tolerance transmembrane protein
scnpilot_expt_750_bf_scaffold_1280_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3066..4376
DNA (1311bp) protein (437aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] id=12494081 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
PpiC-type peptidyl-prolyl cis-trans isomerase
scnpilot_expt_750_bf_scaffold_1280_4
unknown

Not on your lists

comp(4405..4674)
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1280_5
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4720..5019)
DNA (300bp) protein (100aa)
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
scnpilot_expt_750_bf_scaffold_1280_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5358..6137
DNA (780bp) protein (260aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] id=12494083 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
scnpilot_expt_750_bf_scaffold_1280_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6143..8077
DNA (1935bp) protein (645aa)
sulfatase id=12494084 bin=THIO_HI species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
sulfatase
scnpilot_expt_750_bf_scaffold_1280_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9366..9701)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DE24C
hypothetical protein; K07043 Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1280_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9974..10696)
DNA (723bp) protein (241aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=GWE1_Thiobacillus_62_9_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037396E8 rbh
phospholipid/glycerol acyltransferase
scnpilot_expt_750_bf_scaffold_1280_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10693..11235)
DNA (543bp) protein (181aa)
D,D-heptose 1,7-bisphosphate phosphatase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
D,D-heptose 1,7-bisphosphate phosphatase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI0003655233
scnpilot_expt_750_bf_scaffold_1280_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11246..12280)
DNA (1035bp) protein (345aa)
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] Tax=GWE1_Thiobacillus_62_9_curated
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit id=1358665 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_expt_750_bf_scaffold_1280_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13271..13789)
DNA (519bp) protein (173aa)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
glycyl-tRNA synthetase subunit alpha n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E52F5
scnpilot_expt_750_bf_scaffold_1280_13
unknown

Not on your lists

14284..14430
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1280_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14660..15946)
DNA (1287bp) protein (429aa)
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 id=12493302 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 Tax=GWE1_Thiobacillus_62_9_curated
ABC transporter ATPase
scnpilot_expt_750_bf_scaffold_1280_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16320..16472
DNA (153bp) protein (51aa)
hypothetical protein id=12493301 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1280_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16472..16627
DNA (156bp) protein (52aa)
hypothetical protein id=12493300 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_1280_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16694..17854)
DNA (1161bp) protein (387aa)
periplasmic sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] id=12493299 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
periplasmic sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curat
periplasmic sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_1280_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17851..18597)
DNA (747bp) protein (249aa)
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=12493298 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator Tax=GWE1_Thiobacillus_62_9_curated
two component transcriptional regulator
scnpilot_expt_750_bf_scaffold_1280_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18768..19001
DNA (234bp) protein (78aa)
hypothetical protein id=12493297 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1280_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19055..19642
DNA (588bp) protein (196aa)
putative outer membrane lipoprotein id=12493296 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative outer membrane lipoprotein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
outer membrane lipoprotein
scnpilot_expt_750_bf_scaffold_1280_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19682..20053
DNA (372bp) protein (124aa)
hypothetical protein id=12493295 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1280_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20084..21964)
DNA (1881bp) protein (627aa)
kup3; potassium transporter; K03549 KUP system potassium uptake protein id=12493294 bin=THIO_HI species=Cupriavidus sp. UYPR2.512 genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
kup; potassium transport system protein kup; K03549 KUP system potassium uptake protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
kup3; potassium transporter
scnpilot_expt_750_bf_scaffold_1280_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22009..22755)
DNA (747bp) protein (249aa)
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] id=12493293 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ferredoxin-NADP reductase
scnpilot_expt_750_bf_scaffold_1280_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22906..24123)
DNA (1218bp) protein (406aa)
metal dependent phosphohydrolase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=12493292 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
metal dependent phosphohydrolase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
metal dependent phosphohydrolase
scnpilot_expt_750_bf_scaffold_1280_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24140..25177)
DNA (1038bp) protein (346aa)
nucleoside-diphosphate-sugar epimerase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3] id=12493291 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:AAZ98314.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source
scnpilot_expt_750_bf_scaffold_1280_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25222..27210)
DNA (1989bp) protein (663aa)
SLT domain-containing protein; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] id=12493290 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
SLT domain-containing protein; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SLT domain-containing protein
scnpilot_expt_750_bf_scaffold_1280_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27267..27512)
DNA (246bp) protein (82aa)
L-threonine ammonia-lyase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=12493289 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
L-threonine ammonia-lyase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
L-threonine ammonia-lyase (EC:4.3.1.19)
scnpilot_expt_750_bf_scaffold_1280_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27470..28618)
DNA (1149bp) protein (383aa)
L-threonine ammonia-lyase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=12493289 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=292415 species="Bacteria; Proteobacter
Displaying 28 items

View Taxonomy