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scnpilot_expt_750_bf_scaffold_1418

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1418_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..571)
DNA (570bp) protein (190aa)
diguanylate cyclase id=12495108 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
signal transduction protein Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_1418_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1020..2096
DNA (1077bp) protein (359aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] id=12495109 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=GWE1_Thiobacillus_62_9_curated
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
scnpilot_expt_750_bf_scaffold_1418_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2344..2793
DNA (450bp) protein (150aa)
DNA polymerase subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] id=12495110 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA polymerase subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=GWE1_Thiobacillus_62_9_curated
DNA polymerase subunits gamma and tau (EC:2.7.7.7)
scnpilot_expt_750_bf_scaffold_1418_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2790..4004
DNA (1215bp) protein (405aa)
DNA polymerase subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] id=12495110 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA polymerase subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA polymerase subunits gamma and tau (EC:2.7.7.7)
scnpilot_expt_750_bf_scaffold_1418_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4001..4327
DNA (327bp) protein (109aa)
hypothetical protein; K09747 hypothetical protein id=12495111 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K09747 hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5617..6255)
DNA (639bp) protein (213aa)
DedA family protein id=12495114 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
DedA family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DedA family protein
scnpilot_expt_750_bf_scaffold_1418_7
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6258..6941
DNA (684bp) protein (228aa)
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=12495115 bin=THIO_HI species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
OmpR, Response regulator {ECO:0000313|EMBL:KFZ90802.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
two component transcriptional regulator
scnpilot_expt_750_bf_scaffold_1418_8
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6931..8346
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein id=12495116 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein
scnpilot_expt_750_bf_scaffold_1418_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8444..9241)
DNA (798bp) protein (266aa)
hypothetical protein id=12495117 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Membrane protein {ECO:0000313|EMBL:GAO35433.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_10
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9267..10040)
DNA (774bp) protein (258aa)
hypothetical protein id=12495118 bin=THIO_HI species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Integral membrane protein (Rhomboid family) {ECO:0000313|EMBL:ERJ35467.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkhol
scnpilot_expt_750_bf_scaffold_1418_11
Calditerrivibrio nitroreducens, Calditerrivibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(10139..10528)
DNA (390bp) protein (130aa)
propeptide pepsy amd peptidase m4 id=12495119 bin=THIO_HI species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=THIO_HI organism_group=Betaproteobacteria
propeptide pepsy amd peptidase m4
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:ADR18057.1}; Flags: Precursor;; TaxID=768670 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae.;" source="Calditerrivibrio n
scnpilot_expt_750_bf_scaffold_1418_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10935..12020
DNA (1086bp) protein (362aa)
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] id=12495120 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
adenylosuccinate lyase (EC:4.3.2.2)
scnpilot_expt_750_bf_scaffold_1418_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12060..12902
DNA (843bp) protein (281aa)
thioredoxin; K05838 putative thioredoxin id=12495121 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
thioredoxin; K05838 putative thioredoxin Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
thioredoxin
scnpilot_expt_750_bf_scaffold_1418_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12942..13085)
DNA (144bp) protein (48aa)
id=12495122 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c class I Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_1418_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13352..13912)
DNA (561bp) protein (187aa)
greB; transcription elongation factor GreB; K04760 transcription elongation factor GreB id=12495123 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
greB; transcription elongation factor GreB; K04760 transcription elongation factor GreB Tax=GWE1_Thiobacillus_62_9_curated
greB; transcription elongation factor GreB
scnpilot_expt_750_bf_scaffold_1418_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13947..14147)
DNA (201bp) protein (67aa)
hypothetical protein id=12495124 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14164..14892
DNA (729bp) protein (243aa)
HesA/MoeB/ThiF family protein id=12495125 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
HesA/MoeB/ThiF family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
HesA/MoeB/ThiF family protein
scnpilot_expt_750_bf_scaffold_1418_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14922..15122)
DNA (201bp) protein (67aa)
hypothetical protein id=12495126 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_1418_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15119..15670)
DNA (552bp) protein (184aa)
hypothetical protein id=12495127 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15670..16266)
DNA (597bp) protein (199aa)
peptidase S16; K07157 id=12495128 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
peptidase S16; K07157 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidase S16
scnpilot_expt_750_bf_scaffold_1418_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16263..16880)
DNA (618bp) protein (206aa)
aromatic acid decarboxylase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-] id=12495129 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
aromatic acid decarboxylase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
aromatic acid decarboxylase
scnpilot_expt_750_bf_scaffold_1418_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16865..17416)
DNA (552bp) protein (184aa)
hypothetical protein; K00805 heptaprenyl diphosphate synthase [EC:2.5.1.30] id=12495130 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K00805 heptaprenyl diphosphate synthase [EC:2.5.1.30] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17397..17762)
DNA (366bp) protein (122aa)
hypothetical protein id=12495131 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17762..18598)
DNA (837bp) protein (279aa)
hypothetical protein; K06958 UPF0042 nucleotide-binding protein id=12495132 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1418_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18599..19552)
DNA (954bp) protein (318aa)
HPr kinase/phosphorylase (EC:2.7.1.-); K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] id=12495133 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
HPr kinase/phosphorylase (EC:2.7.1.-); K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
HPr kinase/phosphorylase (EC:2.7.1.-)
scnpilot_expt_750_bf_scaffold_1418_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19569..20024)
DNA (456bp) protein (152aa)
PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=12495134 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=GWE1_Thiobacillus_62_9_curated
PTS IIA-like nitrogen-regulatory protein PtsN
scnpilot_expt_750_bf_scaffold_1418_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20118..20453)
DNA (336bp) protein (112aa)
30S ribosomal protein S30P / sigma 54 modulation protein; K05808 putative sigma-54 modulation protein id=12495135 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
30S ribosomal protein S30
Possible Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:AAZ96485.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; T
scnpilot_expt_750_bf_scaffold_1418_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20609..22042)
DNA (1434bp) protein (478aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor Tax=GWE1_Thiobacillus_62_9_curated
RNA polymerase factor sigma-54 (EC:2.7.7.6)
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus thioparus RepID=UPI0003749A25
scnpilot_expt_750_bf_scaffold_1418_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22115..22837)
DNA (723bp) protein (241aa)
ATPase component ABC-type transport system; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] id=12495137 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ATPase component ABC-type transport system; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWE1_Thiobacillus_62_9_curated
ABC transporter ATPase
scnpilot_expt_750_bf_scaffold_1418_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22985..23446)
DNA (462bp) protein (154aa)
OstA-like family protein; K09774 lipopolysaccharide export system protein LptA id=12495138 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
OstA-like family protein; K09774 lipopolysaccharide export system protein LptA Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OstA-like family protein
Displaying items 1-30 of 33 in total

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