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scnpilot_expt_750_bf_scaffold_1643

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1643_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..474
DNA (474bp) protein (158aa)
RND family efflux transporter MFP subunit; K03585 membrane fusion protein id=12494399 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RND family efflux transporter MFP subunit; K03585 membrane fusion protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RND family efflux transporter MFP subunit
scnpilot_expt_750_bf_scaffold_1643_2
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

476..3577
DNA (3102bp) protein (1034aa)
hydrophobe/amphiphile efflux-1 (HAE1) family transporter id=12494400 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hydrophobe/amphiphile efflux-1 (HAE1) family transporter Tax=CG_Rhodocyc_01
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
scnpilot_expt_750_bf_scaffold_1643_3
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3762..4925
DNA (1164bp) protein (388aa)
NodT family RND efflux system outer membrane lipoprotein id=12494401 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
NodT family RND efflux system outer membrane lipoprotein Tax=CG_Rhodocyc_01
NodT family RND efflux system outer membrane lipoprotein
scnpilot_expt_750_bf_scaffold_1643_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5012..5263
DNA (252bp) protein (84aa)
hypothetical protein id=12494402 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96815.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_1643_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5278..5880
DNA (603bp) protein (201aa)
hypothetical protein id=12494403 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1643_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5947..7041
DNA (1095bp) protein (365aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=12494404 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
scnpilot_expt_750_bf_scaffold_1643_7
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7068..7595)
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI76688.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
scnpilot_expt_750_bf_scaffold_1643_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7800..8069
DNA (270bp) protein (90aa)
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] id=12494320 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
acylphosphatase
scnpilot_expt_750_bf_scaffold_1643_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8202..9200
DNA (999bp) protein (333aa)
hypothetical protein id=12494321 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1643_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9225..10556)
DNA (1332bp) protein (444aa)
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] id=12494322 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1643_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10584..10805
DNA (222bp) protein (74aa)
hypothetical protein id=12494323 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_1643_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10740..11516)
DNA (777bp) protein (259aa)
ZIP Zinc transporter id=12494324 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ZIP Zinc transporter Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ZIP Zinc transporter
scnpilot_expt_750_bf_scaffold_1643_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11746..12018)
DNA (273bp) protein (91aa)
competence protein ComEA; K02237 competence protein ComEA id=12494325 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
competence protein ComEA; K02237 competence protein ComEA Tax=GWE1_Thiobacillus_62_9_curated
competence protein ComEA
scnpilot_expt_750_bf_scaffold_1643_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12154..13380)
DNA (1227bp) protein (409aa)
major facilitator transporter; K03449 MFS transporter, CP family, cyanate transporter id=12494326 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Cyanate permease {ECO:0000313|EMBL:GAD23866.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
major facilitator superfamily protein
scnpilot_expt_750_bf_scaffold_1643_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13683..15149
DNA (1467bp) protein (489aa)
hypothetical protein id=12494327 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1643_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15146..15868
DNA (723bp) protein (241aa)
putative lipoprotein id=12494328 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative lipoprotein Tax=GWE1_Thiobacillus_62_9_curated
lipoprotein
scnpilot_expt_750_bf_scaffold_1643_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15870..16484
DNA (615bp) protein (205aa)
hypothetical protein id=12494329 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1643_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16536..17120)
DNA (585bp) protein (195aa)
superoxide dismutase, Fe (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=12494330 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
superoxide dismutase, Fe (EC:1.15.1.1)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophil
scnpilot_expt_750_bf_scaffold_1643_trna_1
unknown

Not on your lists

comp(17259..17332)
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1643_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17380..17748)
DNA (369bp) protein (123aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037BCAE5
MerR family transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
MerR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1643_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17726..18037)
DNA (312bp) protein (104aa)
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha id=12495538 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ihfA; integration host factor subunit alpha
scnpilot_expt_750_bf_scaffold_1643_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18104..20095)
DNA (1992bp) protein (664aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=12495539 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=GWE1_Thiobacillus_62_9_curated
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Displaying 22 items

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