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scnpilot_expt_750_bf_scaffold_985

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_985_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1590
DNA (1590bp) protein (530aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] id=12493129 bin=THIO_HI species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
scnpilot_expt_750_bf_scaffold_985_2
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1661..3802
DNA (2142bp) protein (714aa)
glycogen debranching protein GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-] id=12493128 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales
glycogen debranching protein GlgX
scnpilot_expt_750_bf_scaffold_985_3
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3837..5057
DNA (1221bp) protein (407aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=201089 species="Bacteria; Proteobacteria; Deltapro
acetate kinase id=12493127 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
acetate kinase
scnpilot_expt_750_bf_scaffold_985_4

Not on your lists

5061..7430
DNA (2370bp) protein (790aa)
putative phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22] id=12493126 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Putative phosphoketolase {ECO:0000313|EMBL:CBI10726.1}; EC=4.1.2.- {ECO:0000313|EMBL:CBI10726.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine dra
putative phosphoketolase (EC:4.1.2.22)
scnpilot_expt_750_bf_scaffold_985_5
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7471..8085
DNA (615bp) protein (205aa)
putative uncharacterized protein
Uncharacterized protein id=12493125 bin=THIO_HI species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP87533.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
scnpilot_expt_750_bf_scaffold_985_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8155..8508)
DNA (354bp) protein (118aa)
hypothetical protein id=12493124 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_985_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8518..9039)
DNA (522bp) protein (174aa)
superoxide dismutase, Cu-Zn (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] id=12493123 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
superoxide dismutase, Cu-Zn (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
superoxide dismutase, Cu-Zn (EC:1.15.1.1)
scnpilot_expt_750_bf_scaffold_985_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9169..10497)
DNA (1329bp) protein (443aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] id=12493122 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=GWE1_Thiobacillus_62_9_curated
DNA-directed DNA polymerase (EC:2.7.7.7)
scnpilot_expt_750_bf_scaffold_985_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10516..11814)
DNA (1299bp) protein (433aa)
cyclic nucleotide-binding domain-containing protein; K07058 membrane protein id=12493121 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cyclic nucleotide-binding domain-containing protein; K07058 membrane protein Tax=GWE1_Thiobacillus_62_9_curated
cyclic nucleotide-binding protein
scnpilot_expt_750_bf_scaffold_985_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11845..13038)
DNA (1194bp) protein (398aa)
aminotransferase (EC:2.6.1.-); K00812 aspartate aminotransferase [EC:2.6.1.1] id=12493120 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
aminotransferase (EC:2.6.1.-); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
aminotransferase (EC:2.6.1.-)
scnpilot_expt_750_bf_scaffold_985_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13040..14647
DNA (1608bp) protein (536aa)
UvrABC system protein B id=1342843 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=GWE1_Thiobacillus_62_9_curated
excinuclease ABC subunit B
scnpilot_expt_750_bf_scaffold_985_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14722..15057
DNA (336bp) protein (112aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B id=12493118 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
excinuclease ABC subunit B
scnpilot_expt_750_bf_scaffold_985_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15050..15544
DNA (495bp) protein (165aa)
protein tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] id=12493117 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
protein tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=GWE1_Thiobacillus_62_9_curated
protein tyrosine phosphatase (EC:3.1.3.48)
scnpilot_expt_750_bf_scaffold_985_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15699..16415
DNA (717bp) protein (239aa)
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12493116 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
ECF family RNA polymerase sigma factor
scnpilot_expt_750_bf_scaffold_985_15
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16504..17103
DNA (600bp) protein (200aa)
hypothetical protein id=12493115 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC22101.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (s
scnpilot_expt_750_bf_scaffold_985_16
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17100..17507
DNA (408bp) protein (136aa)
cytochrome c; K08738 cytochrome c id=12493114 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cytochrome C {ECO:0000313|EMBL:KDP87712.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
cytochrome c
scnpilot_expt_750_bf_scaffold_985_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17593..19209)
DNA (1617bp) protein (539aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12] id=12493113 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12] Tax=GWE1_Thiobacillus_62_9_curated
RNAse E (EC:3.1.4.-)
scnpilot_expt_750_bf_scaffold_985_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19182..20111)
DNA (930bp) protein (310aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12] id=12493113 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNAse E (EC:3.1.4.-)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Bet
scnpilot_expt_750_bf_scaffold_985_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20533..21501
DNA (969bp) protein (323aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] id=12493112 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenoph
scnpilot_expt_750_bf_scaffold_985_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..22141
DNA (657bp) protein (219aa)
putative hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] id=12493111 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hydrolase
scnpilot_expt_750_bf_scaffold_985_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22120..22470
DNA (351bp) protein (117aa)
hypothetical protein id=12493110 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_985_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22481..23431
DNA (951bp) protein (317aa)
protease; K04773 protease IV [EC:3.4.21.-] id=12493109 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
protease; K04773 protease IV [EC:3.4.21.-] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
protease
scnpilot_expt_750_bf_scaffold_985_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23428..23646
DNA (219bp) protein (73aa)
transcriptional antiterminator, Rof id=12493108 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transcriptional antiterminator, Rof Tax=GWE1_Thiobacillus_62_9_curated
transcriptional antiterminator, Rof
scnpilot_expt_750_bf_scaffold_985_24
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23703..24530)
DNA (828bp) protein (276aa)
hypothetical protein id=12493107 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_985_25
unknown

Not on your lists

25016..25213
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_985_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25182..25670)
DNA (489bp) protein (163aa)
transmembrane protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] id=12493106 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transmembrane protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=GWE1_Thiobacillus_62_9_curated
transmembrane protein
scnpilot_expt_750_bf_scaffold_985_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25619..26161)
DNA (543bp) protein (181aa)
Maf-like protein; K06287 septum formation protein id=12493105 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Maf-like protein; K06287 septum formation protein Tax=GWE1_Thiobacillus_62_9_curated
Maf-like protein
scnpilot_expt_750_bf_scaffold_985_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26172..28040)
DNA (1869bp) protein (623aa)
pyruvate carboxylase subunit B (EC:4.1.1.3); K01960 pyruvate carboxylase subunit B [EC:6.4.1.1] id=12493104 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pyruvate carboxylase subunit B (EC:4.1.1.3); K01960 pyruvate carboxylase subunit B [EC:6.4.1.1] Tax=GWE1_Thiobacillus_62_9_curated
pyruvate carboxylase subunit B (EC:4.1.1.3)
scnpilot_expt_750_bf_scaffold_985_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28047..29465)
DNA (1419bp) protein (473aa)
pyruvate carboxylase subunit A (EC:6.3.4.14); K01959 pyruvate carboxylase subunit A [EC:6.4.1.1] id=12493103 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
pyruvate carboxylase subunit A (EC:6.3.4.14); K01959 pyruvate carboxylase subunit A [EC:6.4.1.1] Tax=GWE1_Thiobacillus_62_9_curated
pyruvate carboxylase subunit A (EC:6.3.4.14)
scnpilot_expt_750_bf_scaffold_985_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29503..29931
DNA (429bp) protein (143aa)
hypothetical protein; K07040 uncharacterized protein id=12493102 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07040 uncharacterized protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
Displaying items 1-30 of 35 in total

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