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scnpilot_expt_750_bf_scaffold_803_9

Organism: SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220

near complete RP 48 / 55 MC: 7 BSCG 48 / 51 MC: 7 ASCG 13 / 38 MC: 2
Location: comp(9024..9515)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Cupriavidus sp. WS RepID=UPI0003658AD3 similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 111.0
  • Bit_score: 202
  • Evalue 3.60e-49
bacterial regulatory helix-turn-helix , lysR family protein similarity KEGG
DB: KEGG
  • Identity: 89.2
  • Coverage: 111.0
  • Bit_score: 200
  • Evalue 3.00e-49
LysR substrate-binding domain protein {ECO:0000313|EMBL:KAK83184.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordete similarity UNIPROT
DB: UniProtKB
  • Identity: 89.2
  • Coverage: 111.0
  • Bit_score: 200
  • Evalue 1.50e-48

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Taxonomy

Bordetella holmesii → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 492
ATGAAATCGCCCGTCCATCTGAACGCCCTGCGCGCATTTGAGGCCAGCGCCCGTCACCAGAGCTTTTCCGCAGCCGCAGCCGAACTGAACGTGACGCCGGCAGCCGTCGGCCAACTTGTTCGCACGCTGGAGGACTGGCTGGGGACGCCGCTGTTCGTGCGGGGCAACAGCGGGAAGGCCCGGCTGGTTCCGACCGAGACGGCCGAGCACGCCCTACCGGACATTCGTGCCGGCTTCGACCGATTGACGCTGGGGATGGAACGGTTGCGGGAGGGATCGACCAGCGGGGTACTCACCGTGACGGTCAGCCCTGCCTTTGCCTCCAAGTGGCTCAGGCGCAGCCGAGGACACGGCCCTGCGCGCCTTGACGGCACACGGGCGCGGGCTACAGTCGCGGTGAAGGTGATGAAGTCAGGGGAGACGGCTGGACAAGGCAACGGCCGTCCCGCACGCCGACCGCACGGCAAGCGAAGCGCGCAGGCCCGGATCTAG
PROTEIN sequence
Length: 164
MKSPVHLNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRTLEDWLGTPLFVRGNSGKARLVPTETAEHALPDIRAGFDRLTLGMERLREGSTSGVLTVTVSPAFASKWLRRSRGHGPARLDGTRARATVAVKVMKSGETAGQGNGRPARRPHGKRSAQARI*