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scnpilot_expt_750_bf_scaffold_132

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Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_132_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..522
DNA (522bp) protein (174aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CCP6_9BURK
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL68964.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
diguanylate cyclase/phosphodiesterase
scnpilot_expt_750_bf_scaffold_132_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(559..1785)
DNA (1227bp) protein (409aa)
Peptidase, ArgE/DapE family n=1 Tax=Variovorax paradoxus B4 RepID=T1XDY7_VARPD rbh
peptidase, ArgE/DapE family rbh
Peptidase, ArgE/DapE family {ECO:0000313|EMBL:AGU51132.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parado
scnpilot_expt_750_bf_scaffold_132_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1803..3581)
DNA (1779bp) protein (593aa)
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family n=1 Tax=Variovorax sp. CF313 RepID=J2STP9_9BURK rbh
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:EJL68962.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_expt_750_bf_scaffold_132_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3578..4540)
DNA (963bp) protein (321aa)
allantoinase n=1 Tax=Variovorax paradoxus RepID=UPI0003706AF0 rbh
Putative urate catabolism protein {ECO:0000313|EMBL:EJL68961.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
putative xylanase/chitin deacetylase
scnpilot_expt_750_bf_scaffold_132_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4548..5222)
DNA (675bp) protein (225aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035CEB96 rbh
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACS20540.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
scnpilot_expt_750_bf_scaffold_132_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5297..5647
DNA (351bp) protein (117aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU3
hydroxyisourate hydrolase (EC:3.5.2.17)
5-hydroxyisourate hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CCP3_9BURK
scnpilot_expt_750_bf_scaffold_132_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5652..6149)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380CFE5 rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34752.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
scnpilot_expt_750_bf_scaffold_132_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6206..7015
DNA (810bp) protein (270aa)
Xanthine dehydrogenase accessory protein XdhC n=1 Tax=Variovorax sp. CF313 RepID=J2KC65_9BURK rbh
Xanthine dehydrogenase accessory protein XdhC {ECO:0000313|EMBL:EJL77825.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
xanthine dehydrogenase accessory protein xdhc rbh
scnpilot_expt_750_bf_scaffold_132_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7231..8442
DNA (1212bp) protein (404aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D249F rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EJL77824.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
scnpilot_expt_750_bf_scaffold_132_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8518..9858
DNA (1341bp) protein (447aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Putative glycerate kinase n=1 Tax=Variovorax sp. CF313 RepID=J2KXS5_9BURK rbh
Putative glycerate kinase {ECO:0000313|EMBL:EJL77823.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
scnpilot_expt_750_bf_scaffold_132_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10021..11463
DNA (1443bp) protein (481aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CTC9_9BURK rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL77821.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
aldehyde dehydrogenase rbh
scnpilot_expt_750_bf_scaffold_132_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11479..12195)
DNA (717bp) protein (239aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2KC60_9BURK rbh
Putative membrane protein {ECO:0000313|EMBL:EJL77820.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
mgtc/sapb transporter
scnpilot_expt_750_bf_scaffold_132_13
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12233..12808)
DNA (576bp) protein (192aa)
NLI interacting domain protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JVZ2_STEMA
Phosphoprotein phosphatase {ECO:0000313|EMBL:EYR68333.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter caps
NLI interacting domain-containing protein
scnpilot_expt_750_bf_scaffold_132_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12893..15658)
DNA (2766bp) protein (922aa)
magnesium-transporting ATPase n=1 Tax=Variovorax paradoxus RepID=UPI00036DF68F rbh
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:EJL77819.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
magnesium-translocating p-type ATPase
scnpilot_expt_750_bf_scaffold_132_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15866..16069)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:AGU51119.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_expt_750_bf_scaffold_132_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16462..16941
DNA (480bp) protein (160aa)
Protein tyrosine phosphatase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVA2_VARPE
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ADU38696.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parado
scnpilot_expt_750_bf_scaffold_132_17
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16945..18786)
DNA (1842bp) protein (614aa)
phoD; alkaline phosphatase (EC:3.1.4.1)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037D205A rbh
Alkaline phosphatase {ECO:0000313|EMBL:KDB54111.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM
scnpilot_expt_750_bf_scaffold_132_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18899..19327)
DNA (429bp) protein (143aa)
4-hydroxybenzoyL-CoA thioesterase (EC:3.1.2.23)
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:ADU38695.1}; EC=3.1.2.23 {ECO:0000313|EMBL:ADU38695.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI000369E4D4
scnpilot_expt_750_bf_scaffold_132_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19327..20628)
DNA (1302bp) protein (434aa)
TRAP transporter, DctM subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CTC6_9BURK rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EJL77816.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sou
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_expt_750_bf_scaffold_132_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20625..21125)
DNA (501bp) protein (167aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037FE8A3 rbh
TRAP dicarboxylate transporter subunit DctQ rbh
TrapT family, DctQ subunit C4-dicarboxylate transport {ECO:0000313|EMBL:ACS20528.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
scnpilot_expt_750_bf_scaffold_132_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21206..22261)
DNA (1056bp) protein (352aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CSU9_9BURK rbh
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EJL77814.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
TRAP dicarboxylate transporter subunit DctP
scnpilot_expt_750_bf_scaffold_132_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22299..23549)
DNA (1251bp) protein (417aa)
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KXR5_9BURK rbh
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:EJL77813.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
FMN-dependent alpha-hydroxy acid dehydrogenase
scnpilot_expt_750_bf_scaffold_132_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23567..24553)
DNA (987bp) protein (329aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037BC9EB rbh
putative BUG-like extracytoplasmic solute binding receptor, TTT family
Putative BUG-like extracytoplasmic solute binding receptor, TTT family {ECO:0000313|EMBL:AGU51116.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
scnpilot_expt_750_bf_scaffold_132_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24596..26212)
DNA (1617bp) protein (539aa)
indolepyruvate oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00037FD569 rbh
2-oxoacid:ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:EJL77812.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
putative indolepyruvate ferredoxin oxidoreductase, subunit B rbh
scnpilot_expt_750_bf_scaffold_132_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26227..28386)
DNA (2160bp) protein (720aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CTC3_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19094.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
scnpilot_expt_750_bf_scaffold_132_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28464..29378
DNA (915bp) protein (305aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KC50_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL77810.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
LysR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_132_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29430..30683
DNA (1254bp) protein (418aa)
iron transporter n=1 Tax=Variovorax paradoxus RepID=UPI000360EF57 rbh
Mn2+/Fe2 transporter, NRAMP family {ECO:0000313|EMBL:EJL77809.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
natural resistance-associated macrophage protein
scnpilot_expt_750_bf_scaffold_132_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30736..31485
DNA (750bp) protein (250aa)
Putative integral membrane protein, TauE family n=1 Tax=Variovorax paradoxus B4 RepID=T1XKC7_VARPD rbh
putative integral membrane protein, TauE family
Putative integral membrane protein, TauE family {ECO:0000313|EMBL:AGU52754.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sourc
scnpilot_expt_750_bf_scaffold_132_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31660..33306
DNA (1647bp) protein (549aa)
FAD-binding molybdopterin dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00038112C8 rbh
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19107.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
xanthine dehydrogenase, small subunit rbh
scnpilot_expt_750_bf_scaffold_132_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33311..35779
DNA (2469bp) protein (823aa)
xanthine dehydrogenase, molybdopterin binding subunit (EC:1.17.1.4) rbh
Xanthine dehydrogenase, molybdopterin binding subunit {ECO:0000313|EMBL:ADU38680.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ADU38680.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
Xanthine dehydrogenase, molybdopterin binding subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UV86_VARPE rbh
Displaying items 1-30 of 143 in total

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