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scnpilot_expt_750_bf_scaffold_241

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Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_241_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}
NAD(P) transhydrogenase subunit beta n=1 Tax=Variovorax sp. CF313 RepID=J3CWP8_9BURK
scnpilot_expt_750_bf_scaffold_241_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

256..558
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I788_9BURK
hypothetical protein
hypothetical protein Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_expt_750_bf_scaffold_241_3
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(579..1286)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000371AF7C rbh
ABC transporter family protein
ABC transporter family protein {ECO:0000313|EMBL:AIO68128.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;"
scnpilot_expt_750_bf_scaffold_241_4
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1297..2004)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036C5788 rbh
ABC transporter family protein
ABC transporter family protein {ECO:0000313|EMBL:AIO66843.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;"
scnpilot_expt_750_bf_scaffold_241_5
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2001..3074)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037CC77E rbh
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KGR99342.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burk
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_241_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3071..3940)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000374A57B rbh
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:ABN83385.1}; TaxID=320373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group
scnpilot_expt_750_bf_scaffold_241_7
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3953..5221)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037F8080 rbh
periplasmic binding domain protein rbh
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative {ECO:0000313|EMBL:ABC37248.1}; Periplasmic binding domain protein {ECO:0000313|EMBL:AIP26296.1}; TaxID=27184
scnpilot_expt_750_bf_scaffold_241_8
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5261..6763)
DNA (1503bp) protein (501aa)
aldehyde dehydrogenase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD2 rbh
aldehyde dehydrogenase family protein
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:AIO65105.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei g
scnpilot_expt_750_bf_scaffold_241_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6810..7199)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003766ED2
Uncharacterized protein {ECO:0000313|EMBL:KGR99301.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" sourc
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_10
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7241..8047)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD4
molybdenum cofactor biosynthesis F family protein
Molybdenum cofactor biosynthesis F family protein {ECO:0000313|EMBL:AIO65547.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; ps
scnpilot_expt_750_bf_scaffold_241_11
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8058..8867)
DNA (810bp) protein (270aa)
3-oxoacyl-ACP reductase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD5 rbh
short chain dehydrogenase family protein
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AIO67087.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomalle
scnpilot_expt_750_bf_scaffold_241_12
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8944..10545)
DNA (1602bp) protein (534aa)
GMC family oxidoreductase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD6 rbh
alkJ; alcohol dehydrogenase acceptor
Alcohol dehydrogenase acceptor {ECO:0000313|EMBL:AIO67499.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;"
scnpilot_expt_750_bf_scaffold_241_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10575..11795
DNA (1221bp) protein (407aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Variovorax sp. CF313 RepID=J2SQL5_9BURK rbh
scnpilot_expt_750_bf_scaffold_241_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12165..14345
DNA (2181bp) protein (727aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=595537 species="Bacteria; P
Primosomal protein N n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8I0_VARPE rbh
primosomal protein n'
scnpilot_expt_750_bf_scaffold_241_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14395..15306
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8H9_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29635.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_241_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15324..15545)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D6A37
Uncharacterized protein {ECO:0000313|EMBL:EJL67835.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15773..16492
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CAU5_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL67834.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16507..17532)
DNA (1026bp) protein (342aa)
Auxin Efflux Carrier n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8H6_VARPE rbh
auxin efflux carrier
Auxin Efflux Carrier {ECO:0000313|EMBL:ADU34959.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (str
scnpilot_expt_750_bf_scaffold_241_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17678..19780
DNA (2103bp) protein (701aa)
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Pro
DNA/RNA helicase, superfamily I n=1 Tax=Variovorax sp. CF313 RepID=J2K3J3_9BURK rbh
UvrD/REP helicase
scnpilot_expt_750_bf_scaffold_241_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19777..20256
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369BA9C
Uncharacterized protein {ECO:0000313|EMBL:EJL67832.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20253..21419
DNA (1167bp) protein (389aa)
phospholipase a(1) (EC:3.1.1.32)
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000378BA70 rbh
Outer membrane phospholipase A {ECO:0000313|EMBL:EJL67831.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sou
scnpilot_expt_750_bf_scaffold_241_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21445..22302
DNA (858bp) protein (286aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1144315 species=
NAD synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000372435B rbh
NAD+ synthetase
scnpilot_expt_750_bf_scaffold_241_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22390..23109
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000360FF38
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50432.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_expt_750_bf_scaffold_241_24
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23111..25765
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T7V6_BURPP rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD18858.1}; Flags: Precursor;; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source=
scnpilot_expt_750_bf_scaffold_241_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25765..26424
DNA (660bp) protein (220aa)
Flagellar motor protein n=1 Tax=Variovorax sp. CF313 RepID=J2SXP1_9BURK rbh
Flagellar motor protein {ECO:0000313|EMBL:EJL70412.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26438..27097
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B7D19
Uncharacterized protein {ECO:0000313|EMBL:EJL70411.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
scnpilot_expt_750_bf_scaffold_241_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27245..28645
DNA (1401bp) protein (467aa)
Aldehyde dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UX43_VARPE rbh
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_expt_750_bf_scaffold_241_28
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28667..29935)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036671F8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA62533.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladi
scnpilot_expt_750_bf_scaffold_241_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29943..31199)
DNA (1257bp) protein (419aa)
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534
HlyD family type I secretion membrane fusion protein
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
scnpilot_expt_750_bf_scaffold_241_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31186..33312)
DNA (2127bp) protein (709aa)
ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EAFB5
type I secretion system ATPase
Type I secretion system ATPase {ECO:0000313|EMBL:ADU39198.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax para
Displaying items 1-30 of 68 in total

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