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scnpilot_expt_750_bf_scaffold_269

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Displaying items 1-30 of 175 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_269_trna_2
unknown

Not on your lists

comp(4..85)
DNA (82bp)
transferRNA
scnpilot_expt_750_bf_scaffold_269_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..1259)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365AB0D rbh
ychF; GTP-dependent nucleic acid-binding protein EngD
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiob
scnpilot_expt_750_bf_scaffold_269_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1256..1852)
DNA (597bp) protein (199aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
peptidyl-tRNA hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F2613 rbh
scnpilot_expt_750_bf_scaffold_269_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1910..2518)
DNA (609bp) protein (203aa)
50S ribosomal protein L25 n=1 Tax=Thiobacillus denitrificans RepID=UPI000374C878 rbh
50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogeno
scnpilot_expt_750_bf_scaffold_269_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2611..3561)
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLR5_THIDA rbh
scnpilot_expt_750_bf_scaffold_269_trna_1
unknown

Not on your lists

comp(3636..3707)
DNA (72bp)
transferRNA
scnpilot_expt_750_bf_scaffold_269_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3715..4551)
DNA (837bp) protein (279aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003788A70 rbh
scnpilot_expt_750_bf_scaffold_269_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4548..5084)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360F0F9 rbh
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB Tax=GWE1_Thiobacillus_62_9_curated
outer membrane lipoprotein LolB
scnpilot_expt_750_bf_scaffold_269_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5096..6895)
DNA (1800bp) protein (600aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B597E rbh
TPR repeat-containing protein Tax=GWE1_Thiobacillus_62_9_curated
TPR repeat-containing protein
scnpilot_expt_750_bf_scaffold_269_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7296..8108
DNA (813bp) protein (271aa)
DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=GWE1_Thiobacillus_62_9_c
DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
5-hydroxymethyluracil DNA glycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036718D6 rbh
scnpilot_expt_750_bf_scaffold_269_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8184..10148
DNA (1965bp) protein (655aa)
GTPase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E2F0A rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_269_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10153..10404)
DNA (252bp) protein (84aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DDEFA
ferredoxin protein Tax=GWE1_Thiobacillus_62_9_curated
ferredoxin protein
scnpilot_expt_750_bf_scaffold_269_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10423..10905)
DNA (483bp) protein (161aa)
phosphopantetheine adenylyltransferase (EC:2.7.7.3)
phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWE1_Thiobacillus_62_9_curated
phosphopantetheine adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C514B rbh
scnpilot_expt_750_bf_scaffold_269_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10909..11484)
DNA (576bp) protein (192aa)
hypothetical protein; K00599 [EC:2.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C37E4 rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_269_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11474..12796)
DNA (1323bp) protein (441aa)
insulinase family protein; K01422 [EC:3.4.99.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
zinc protease n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BB06E rbh
insulinase
scnpilot_expt_750_bf_scaffold_269_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12786..14144)
DNA (1359bp) protein (453aa)
insulinase family protein; K01422 [EC:3.4.99.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidase M16 n=1 Tax=Thiobacillus denitrificans RepID=UPI000379CF02 rbh
insulinase
scnpilot_expt_750_bf_scaffold_269_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14272..15294
DNA (1023bp) protein (341aa)
cell division protein FtsY n=1 Tax=Thiobacillus thioparus RepID=UPI00036C836F
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria;
scnpilot_expt_750_bf_scaffold_269_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15291..15953
DNA (663bp) protein (221aa)
ABC transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A51EA rbh
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein Tax=GWE1_Thiobacillus_62_9_curated
cell division ATP-binding protein FtsE
scnpilot_expt_750_bf_scaffold_269_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15950..16858
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BC3D2 rbh
cell division protein FtsX; K09811 cell division transport system permease protein Tax=GWE1_Thiobacillus_62_9_curated
cell division protein FtsX
scnpilot_expt_750_bf_scaffold_269_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16946..17791
DNA (846bp) protein (282aa)
RNA polymerase sigma 70 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CE773 rbh
sigma-70 factor; K03089 RNA polymerase sigma-32 factor Tax=GWE1_Thiobacillus_62_9_curated
sigma-70 factor
scnpilot_expt_750_bf_scaffold_269_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17943..18923
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003693B09 rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_269_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19042..19149)
DNA (108bp) protein (36aa)
hypothetical protein id=1308439 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_269_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19185..19406)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003781154
cytochrome oxidase maturation protein cbb3-type
Cytochrome oxidase maturation protein cbb3-type {ECO:0000313|EMBL:AAZ96297.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;
scnpilot_expt_750_bf_scaffold_269_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19403..20179)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381FE4C rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_269_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20176..21612)
DNA (1437bp) protein (479aa)
(Fe-S)-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003707171 rbh
iron-sulfur cluster-binding protein Tax=GWE1_Thiobacillus_62_9_curated
(Fe-S)-binding protein
scnpilot_expt_750_bf_scaffold_269_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21686..22606)
DNA (921bp) protein (307aa)
cytochrome C oxidase subunit III n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD88D rbh
cytochrome c oxidase cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III Tax=GWE1_Thiobacillus_62_9_curated
cytochrome c oxidase cbb3-type subunit III rbh
scnpilot_expt_750_bf_scaffold_269_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22603..22788)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003829728
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96293.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_269_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22813..23559)
DNA (747bp) protein (249aa)
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EC298 rbh
cbb3-type cytochrome c oxidase subunit II
Cytochrome C oxidase, mono-heme subunit/FixO {ECO:0000313|EMBL:AAZ96292.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" s
scnpilot_expt_750_bf_scaffold_269_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23577..25031)
DNA (1455bp) protein (485aa)
cytochrome oxidase subunit I n=1 Tax=Thiobacillus denitrificans RepID=UPI000379AB21 rbh
cbb3-type cytochrome c oxidase subunit I
Cytochrome c oxidase cbb3-type, subunit I {ECO:0000313|EMBL:AAZ96291.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sour
scnpilot_expt_750_bf_scaffold_269_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25154..25747)
DNA (594bp) protein (198aa)
photosynthetic protein synthase I n=1 Tax=Thiobacillus denitrificans RepID=UPI0003809900 rbh
putative SCO1/SenC family protein; K07152 Tax=GWE1_Thiobacillus_62_9_curated
SCO1/SenC family protein
Displaying items 1-30 of 175 in total

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