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scnpilot_expt_750_bf_scaffold_483

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Displaying items 1-30 of 103 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_483_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1742)
DNA (1740bp) protein (580aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=292415 species="Bacteria; Proteobacteria; Beta
RNAse R (EC:3.1.-.-)
exoribonuclease R n=1 Tax=Thiobacillus denitrificans RepID=UPI000367B615
scnpilot_expt_750_bf_scaffold_483_trna_1
unknown

Not on your lists

1790..1873
DNA (84bp)
transferRNA
scnpilot_expt_750_bf_scaffold_483_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1941..3170)
DNA (1230bp) protein (410aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
adenylosuccinate synthetase (EC:6.3.4.4)
adenylosuccinate synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B2587
scnpilot_expt_750_bf_scaffold_483_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3185..4150)
DNA (966bp) protein (322aa)
ATP phosphoribosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036518BB rbh
ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit Tax=GWE1_Thiobacillus_62_9_curated
ATP phosphoribosyltransferase
scnpilot_expt_750_bf_scaffold_483_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4166..4354)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374ED1F
hypothetical protein; K09937 hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4351..5232)
DNA (882bp) protein (294aa)
hypothetical protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] Tax=GWE1_Thiobacillus_62_9_curated
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378A6D4 rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5229..6428)
DNA (1200bp) protein (400aa)
HflK; K04088 membrane protease subunit HflK [EC:3.4.-.-] Tax=GWE1_Thiobacillus_62_9_curated
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003600E2C rbh
HflK
scnpilot_expt_750_bf_scaffold_483_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6434..7618)
DNA (1185bp) protein (395aa)
GTP-binding proten HflX n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EDE89 rbh
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=GWE1_Thiobacillus_62_9_curated
GTP-binding protein HflX
scnpilot_expt_750_bf_scaffold_483_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7786..9594)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365C75F rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9647..10741)
DNA (1095bp) protein (365aa)
galactose-1-phosphate uridyl transferase, class I (EC:2.7.7.10); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
galactose-1-phosphate uridyl transferase, class I (EC:2.7.7.10)
galactose-1-phosphate uridylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003739CB2
scnpilot_expt_750_bf_scaffold_483_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10914..11195
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A912C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96553.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_483_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11198..11449
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037490F6
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_12
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11415..13412)
DNA (1998bp) protein (666aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003712E6C rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase domain protein {ECO:0000313|EMBL:KIN89241.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB
scnpilot_expt_750_bf_scaffold_483_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13523..14773)
DNA (1251bp) protein (417aa)
engA, yfgK, yphC; GTP-binding protein EngA; K03977 GTP-binding protein id=12493866 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
engA; GTP-binding protein EngA
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydroge
scnpilot_expt_750_bf_scaffold_483_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14819..15973)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A9027 rbh
pyrrolo-quinoline quinone Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
pyrrolo-quinoline quinone
scnpilot_expt_750_bf_scaffold_483_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15976..16617)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379670A rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16631..17896)
DNA (1266bp) protein (422aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=GWE1_Thiobacillus_62_9_curated
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000362106A rbh
scnpilot_expt_750_bf_scaffold_483_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17919..19139)
DNA (1221bp) protein (407aa)
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=GWE1_Thiobacillus_62_9_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003713503 rbh
scnpilot_expt_750_bf_scaffold_483_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19172..19984)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E52B8 rbh
hypothetical protein; K15539 cytoskeleton protein RodZ Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19981..20751)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7605 rbh
TPR repeat-containing pilus assembly protein PilF
Putative pilus assembly protein PilF, TPR repeat {ECO:0000313|EMBL:AAZ96545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
scnpilot_expt_750_bf_scaffold_483_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20748..21851)
DNA (1104bp) protein (368aa)
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D5F95
hypothetical protein
scnpilot_expt_750_bf_scaffold_483_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21864..22289)
DNA (426bp) protein (142aa)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nucleoside diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAF29
scnpilot_expt_750_bf_scaffold_483_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22500..23258
DNA (759bp) protein (253aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B1008 rbh
integral membrane protein TerC
Integral membrane protein TerC {ECO:0000313|EMBL:ABE45570.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp
scnpilot_expt_750_bf_scaffold_483_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..24550)
DNA (1296bp) protein (432aa)
cell cycle protein MesJ; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037898AB rbh
cell cycle protein MesJ
scnpilot_expt_750_bf_scaffold_483_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24564..25532)
DNA (969bp) protein (323aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=GWE1_Thiobacillus_62_9_curated
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=1357658 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
scnpilot_expt_750_bf_scaffold_483_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25614..26096)
DNA (483bp) protein (161aa)
fkbp-type peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=GWE1_Thiobacillus_62_9_curated
peptidylprolyl isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003819DCD rbh
FKBP-type peptidylprolyl isomerase
scnpilot_expt_750_bf_scaffold_483_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26093..26572)
DNA (480bp) protein (160aa)
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A1C65 rbh
alkyl hydroperoxide reductase
scnpilot_expt_750_bf_scaffold_483_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26646..27764
DNA (1119bp) protein (373aa)
cupin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CEDFF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96538.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_483_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27761..28231
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C3A5A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96537.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_483_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28237..29046)
DNA (810bp) protein (270aa)
anaerobic ribonucleoside triphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003747F3C rbh
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:AAZ96536.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus
Displaying items 1-30 of 103 in total

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