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scnpilot_expt_750_bf_scaffold_678

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_678_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..508
DNA (507bp) protein (169aa)
RNA polymerase sigma factor RpoD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGA9_THIDA
carbamoyl-phosphate synthase L chain, ATP-binding
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; H
scnpilot_expt_750_bf_scaffold_678_trna_1
unknown

Not on your lists

543..616
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_678_2
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

900..1400
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381D4D8
hypothetical protein Tax=CG_Hydro_01
hypothetical protein
scnpilot_expt_750_bf_scaffold_678_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1734..2318
DNA (585bp) protein (195aa)
dihydroorotate oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037201D8 rbh
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
slmA; nucleoid occlusion protein
scnpilot_expt_750_bf_scaffold_678_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2306..3076)
DNA (771bp) protein (257aa)
molybdopterin biosynthesis protein MoeB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FCE1C rbh
adenylyltransferase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
adenylyltransferase
scnpilot_expt_750_bf_scaffold_678_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3091..3486)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D715
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_678_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3571..4977)
DNA (1407bp) protein (469aa)
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
peptidase S41A, protease (EC:3.4.21.102)
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD57E rbh
scnpilot_expt_750_bf_scaffold_678_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4979..6229)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037617E1 rbh
M23 family peptidase Tax=GWE1_Thiobacillus_62_9_curated
M23 family peptidase
scnpilot_expt_750_bf_scaffold_678_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6259..7800)
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=GWE1_Thiobacillus_62_9_curated
phosphoglyceromutase (EC:5.4.2.1)
phosphoglyceromutase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DFE07 rbh
scnpilot_expt_750_bf_scaffold_678_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7970..8293
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator id=12493240 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ArsR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_678_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8526..9566
DNA (1041bp) protein (347aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000375DF06 rbh
secretion protein HlyD Tax=GWE1_Thiobacillus_62_9_curated
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_678_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9579..12800
DNA (3222bp) protein (1074aa)
multidrug transporter AcrB n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A15F rbh
acriflavin resistance protein Tax=GWE1_Thiobacillus_62_9_curated
acriflavin resistance protein
scnpilot_expt_750_bf_scaffold_678_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12790..13008
DNA (219bp) protein (73aa)
sulfurtransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA446
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_678_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13021..13437
DNA (417bp) protein (139aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637DEF
rhodanese-like protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
rhodanese-like protein
scnpilot_expt_750_bf_scaffold_678_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13447..13710
DNA (264bp) protein (88aa)
glutaredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F6436
glutaredoxin, GrxC; K03676 glutaredoxin 3 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glutaredoxin, GrxC
scnpilot_expt_750_bf_scaffold_678_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13780..14208
DNA (429bp) protein (143aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8] Tax=GWE1_Thiobacillus_62_9_curated
thioredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D8A71
thioredoxin
scnpilot_expt_750_bf_scaffold_678_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14273..14731
DNA (459bp) protein (153aa)
preprotein translocase subunit SecB n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CEAD1
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
preprotein translocase subunit SecB
scnpilot_expt_750_bf_scaffold_678_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14728..15186
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371DB6B
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_678_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15183..16169
DNA (987bp) protein (329aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
glycerol-3-phosphate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003601BC5 rbh
scnpilot_expt_750_bf_scaffold_678_19
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16229..17632)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DDAC1 rbh
virulence factor family protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
virulence factor family protein
scnpilot_expt_750_bf_scaffold_678_20
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17644..20238)
DNA (2595bp) protein (865aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7F66 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA92223.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobi
scnpilot_expt_750_bf_scaffold_678_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20347..21549)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ05_THIDA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ97365.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sou
scnpilot_expt_750_bf_scaffold_678_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21549..22253)
DNA (705bp) protein (235aa)
ABC transporter related id=1319185 bin=GWE1_T_denit_62_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=GWE1_Thiobacillus_62_9_curated
ABC transporter
scnpilot_expt_750_bf_scaffold_678_23
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22250..23545)
DNA (1296bp) protein (432aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M672_GEODF rbh
RND family efflux transporter MFP subunit
Efflux pump, RND family, membrane fusion protein {ECO:0000313|EMBL:ACM21860.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" so
scnpilot_expt_750_bf_scaffold_678_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23542..25035)
DNA (1494bp) protein (498aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036886CF rbh
NodT family RND efflux system outer membrane lipoprotein Tax=GWE1_Thiobacillus_62_9_curated
NodT family RND efflux system outer membrane lipoprotein
scnpilot_expt_750_bf_scaffold_678_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25148..26098
DNA (951bp) protein (317aa)
cytochrome C biogenesis protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003758715 rbh
heat shock protein DnaJ domain-containing protein; K05516 curved DNA-binding protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
heat shock protein DnaJ domain-containing protein
scnpilot_expt_750_bf_scaffold_678_26
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26102..26404
DNA (303bp) protein (101aa)
MerR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D2063
Uncharacterized protein {ECO:0000313|EMBL:EXI68650.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
transcriptional regulatory protein, MerR family
scnpilot_expt_750_bf_scaffold_678_27
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26482..26901
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037892C3
Maebl {ECO:0000313|EMBL:CDY77117.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
protein of unknown function
Displaying 28 items

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