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scnpilot_expt_750_bf_scaffold_914

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_914_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..418
DNA (417bp) protein (139aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00035C4661
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_914_2
BJP_IG2158_Nitrospirales_45_240, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

415..819
DNA (405bp) protein (135aa)
hypothetical protein
Uncharacterized protein id=4942130 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=BJP_IG2158_Nitrospirales_45_240
scnpilot_expt_750_bf_scaffold_914_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

816..1385
DNA (570bp) protein (190aa)
ruvC; Holliday junction resolvase; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Holliday junction resolvase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C640A rbh
ruvC; Holliday junction resolvase
scnpilot_expt_750_bf_scaffold_914_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1425..2009
DNA (585bp) protein (195aa)
DNA recombination protein, RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWE1_Thiobacillus_62_9_curated
Holliday junction DNA helicase RuvA n=1 Tax=Thiobacillus denitrificans RepID=UPI000378BE3C
DNA recombination protein, RuvA
scnpilot_expt_750_bf_scaffold_914_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2012..3511
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374B469 rbh
diguanylate cyclase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
diguanylate cyclase
scnpilot_expt_750_bf_scaffold_914_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3547..4578
DNA (1032bp) protein (344aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=GWE1_Thiobacillus_62_9_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction DNA helicase RuvB n=1 Tax=Thiobacillus denitrificans RepID=UPI000360A38E rbh
scnpilot_expt_750_bf_scaffold_914_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4575..4982
DNA (408bp) protein (136aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037503D9
4-hydroxybenzoyl-CoA thioesterase
scnpilot_expt_750_bf_scaffold_914_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4979..5671
DNA (693bp) protein (231aa)
protein tolQ n=1 Tax=Thiobacillus denitrificans RepID=UPI0003707686 rbh
MotA/TolQ/ExbB proton channel family protein
MotA/TolQ/ExbB proton channel family {ECO:0000313|EMBL:AAZ98162.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
scnpilot_expt_750_bf_scaffold_914_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5675..6085
DNA (411bp) protein (137aa)
biopolymer transporter ExbD n=1 Tax=Thiobacillus denitrificans RepID=UPI0003725F1A
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR Tax=GWE1_Thiobacillus_62_9_curated
biopolymer transport protein ExbD/TolR
scnpilot_expt_750_bf_scaffold_914_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6082..6960
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7344 rbh
putative TonB protein Tax=GWE1_Thiobacillus_62_9_curated
TonB protein
scnpilot_expt_750_bf_scaffold_914_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7149..8348
DNA (1200bp) protein (400aa)
translocation protein TolB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003779B92 rbh
tolB; translocation protein TolB; K03641 TolB protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
tolB; translocation protein TolB
scnpilot_expt_750_bf_scaffold_914_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8442..9029
DNA (588bp) protein (196aa)
peptidoglycan-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036427C5 rbh
outer membrane protein, porin-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
outer membrane protein, porin-associated lipoprotein
scnpilot_expt_750_bf_scaffold_914_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9039..9821
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003610CBD rbh
TPR repeat-containing protein Tax=GWE1_Thiobacillus_62_9_curated
TPR repeat-containing protein
scnpilot_expt_750_bf_scaffold_914_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9942..10607
DNA (666bp) protein (222aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CDF28 rbh
radical activating enzyme; K10026 queuosine biosynthesis protein QueE Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
radical activating enzyme
scnpilot_expt_750_bf_scaffold_914_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10604..11293
DNA (690bp) protein (230aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000366D164 rbh
ExsB ATPase; K06920 queuosine biosynthesis protein QueC Tax=GWE1_Thiobacillus_62_9_curated
ExsB ATPase
scnpilot_expt_750_bf_scaffold_914_trna_1
unknown

Not on your lists

11458..11530
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_914_16
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11613..11948)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AFE9_COLFT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK63957.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivor
scnpilot_expt_750_bf_scaffold_914_17
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11945..12217)
DNA (273bp) protein (91aa)
prevent-host-death protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A674E
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AJX13314.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkhol
scnpilot_expt_750_bf_scaffold_914_18
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12579..13013
DNA (435bp) protein (145aa)
Type IV pilin PilA n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MK06_PSEPS
prepilin peptidase dependent protein D [precursor]; K02650 type IV pilus assembly protein PilA Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
prepilin peptidase dependent protein D [precursor]
scnpilot_expt_750_bf_scaffold_914_19
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13180..13449)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ETC7_CUPNN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI75598.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necato
scnpilot_expt_750_bf_scaffold_914_20
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13433..13657)
DNA (225bp) protein (75aa)
CopG family transcripitonal regulator n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QC84_RALPI
CopG family transcripitonal regulator
CopG family transcripitonal regulator {ECO:0000313|EMBL:AGW88584.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralsto
scnpilot_expt_750_bf_scaffold_914_21
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13842..15185)
DNA (1344bp) protein (448aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] id=12495172 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.
scnpilot_expt_750_bf_scaffold_914_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15277..15732)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BB10
putative regulatory protein RecX; K03565 regulatory protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
regulatory protein RecX
scnpilot_expt_750_bf_scaffold_914_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15716..16057)
DNA (342bp) protein (114aa)
Protein RecA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGU3_THIDA
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobac
Displaying 24 items

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