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scnpilot_expt_750_bf_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 677 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_42_1
Renibacterium salmoninarum, Renibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..2097
DNA (2097bp) protein (699aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B30C06
heme transport associated protein
Heme transport associated protein {ECO:0000313|EMBL:ABY24278.1}; TaxID=288705 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Renibacterium.;" source="Renibacterium salmoninarum (str
scnpilot_expt_750_bf_scaffold_42_2
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2183..3337)
DNA (1155bp) protein (385aa)
Bifunctional enzyme IspD/IspF id=7721082 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="
scnpilot_expt_750_bf_scaffold_42_3
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3433..3915)
DNA (483bp) protein (161aa)
CarD family transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003656E3D rbh
RNA polymerase-binding transcription factor CarD {ECO:0000313|EMBL:CDK01704.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacter
CarD family transcriptional regulator
scnpilot_expt_750_bf_scaffold_42_4
actinobacterium acMicro-1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4044..4565
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B44EFF
Uncharacterized protein {ECO:0000313|EMBL:KGA06313.1}; TaxID=1504316 species="Bacteria; Actinobacteria.;" source="actinobacterium acMicro-1.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_5
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4601..5284)
DNA (684bp) protein (228aa)
Two-component system, regulatory protein id=7721079 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
XRE family transcriptional regulator {ECO:0000313|EMBL:AJW79883.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis su
putative two-component system response regulator
scnpilot_expt_750_bf_scaffold_42_6
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5281..6435)
DNA (1155bp) protein (385aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="
Two-component system, sensor protein id=7721078 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
two-component system sensor protein
scnpilot_expt_750_bf_scaffold_42_7
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6636..7277
DNA (642bp) protein (214aa)
PhoU family transcriptional regulator n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI00028A2405
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
phoU; phosphate transport system regulator
scnpilot_expt_750_bf_scaffold_42_8
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7302..7712)
DNA (411bp) protein (137aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; T
Ribonuclease VapC n=2 Tax=Saccharomonospora azurea RepID=H8G4Y3_9PSEU
PIN domain protein, Putative toxin of TAS system
scnpilot_expt_750_bf_scaffold_42_9
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7713..8003)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI000371E317
Uncharacterized protein {ECO:0000313|EMBL:KHK99788.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
scnpilot_expt_750_bf_scaffold_42_10
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8019..8333)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B4A2F0
Uncharacterized protein {ECO:0000313|EMBL:CDK00474.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_11
unknown

Not on your lists

comp(8345..8545)
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_42_12
unknown

Not on your lists

comp(8579..9064)
DNA (486bp) protein (162aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_42_13
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9180..9926)
DNA (747bp) protein (249aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase id=7721070 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};;
phosphoglyceromutase
scnpilot_expt_750_bf_scaffold_42_14
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9965..10768
DNA (804bp) protein (268aa)
methylase n=1 Tax=Curtobacterium sp. B8 RepID=UPI00034C7B8F rbh
Contig_101, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01966.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_15
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10779..11825)
DNA (1047bp) protein (349aa)
Conserved membrane protein id=7721062 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KDP90842.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_16
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11908..12996)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI0002891F4B rbh
Glycine cleavage T-protein barrel domain protein {ECO:0000313|EMBL:ERK71189.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquati
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_17
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13064..13696)
DNA (633bp) protein (211aa)
fatty acid-binding protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B6EB4B
UPF0678 fatty acid-binding protein-like protein N136_02466 {ECO:0000256|HAMAP-Rule:MF_01297}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Le
fatty acid-binding protein
scnpilot_expt_750_bf_scaffold_42_18
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13701..13811)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIH3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EAR24948.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
scnpilot_expt_750_bf_scaffold_42_19
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13838..14113)
DNA (276bp) protein (92aa)
Hypothetical membrane protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BAY5_9MICO
Membrane protein {ECO:0000313|EMBL:AJW79892.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
hypothetical membrane protein
scnpilot_expt_750_bf_scaffold_42_20
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14208..14894
DNA (687bp) protein (229aa)
Transcriptional regulator, GlnR family id=7721057 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Contig_101, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01971.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
transcriptional regulatory protein
scnpilot_expt_750_bf_scaffold_42_21
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14933..17107
DNA (2175bp) protein (725aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferas
ppk; hypothetical protein (EC:2.7.4.1)
Polyphosphate kinase id=7721055 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_expt_750_bf_scaffold_42_22
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17104..18045
DNA (942bp) protein (314aa)
Putative MutT family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIH7_9ACTN
Putative MutT family protein {ECO:0000313|EMBL:EAR24952.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
NUDIX hydrolase
scnpilot_expt_750_bf_scaffold_42_23
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18168..19262
DNA (1095bp) protein (365aa)
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;
Phosphate-binding protein PstS id=7721053 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
substrate-binding transport lipoprotein rbh
scnpilot_expt_750_bf_scaffold_42_24
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19358..20296
DNA (939bp) protein (313aa)
ABC transporter, permease protein id=7721052 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Phosphate ABC transporter permease {ECO:0000313|EMBL:KFF60062.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;
pstC; phosphate ABC transporter permease
scnpilot_expt_750_bf_scaffold_42_25
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20296..21384
DNA (1089bp) protein (363aa)
ABC transporter, permease protein id=7721051 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Phosphate ABC transporter permease {ECO:0000313|EMBL:KGJ80793.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense
ABC transporter permease
scnpilot_expt_750_bf_scaffold_42_26
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21405..22184
DNA (780bp) protein (260aa)
Phosphate-transporting ATPase {ECO:0000256|SAAS:SAAS00042365}; EC=3.6.3.27 {ECO:0000256|SAAS:SAAS00042365};; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobac
phosphate ABC transporter ATP-binding protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI00036AA73E rbh
phosphate import ATP-binding protein PstB
scnpilot_expt_750_bf_scaffold_42_27
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22573..23205)
DNA (633bp) protein (211aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Microbacteriaceae RepID=UPI000366C2DC
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KGJ80788.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopku
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_trna_1
unknown

Not on your lists

23262..23334
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_42_28
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23656..24861
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3CAQ2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KHL04493.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_42_29
Knoellia subterranea, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25298..26752
DNA (1455bp) protein (485aa)
Uncharacterized protein {ECO:0000313|EMBL:KGN37083.1}; TaxID=1385521 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia subterranea KCTC 19937.;"
Putative ATPase id=2165831 bin=GWE2_Spirochaete_31_10 species=Joostella marina genus=Joostella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good + rbh
hypothetical protein
Displaying items 1-30 of 677 in total

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