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scnpilot_expt_750_bf_scaffold_182

Search features with annotation key words

Displaying items 1-30 of 240 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_182_1
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

128..385
DNA (258bp) protein (86aa)
TaqII restriction endonuclease n=1 Tax=Thermus aquaticus RepID=Q8GJ86_THEAQ
RM.TaqII {ECO:0000313|EMBL:AHG53062.1}; TaqII restriction endonuclease {ECO:0000313|EMBL:AAL23675.1}; TaxID=271 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" so
protein of unknown function DUF450
scnpilot_expt_750_bf_scaffold_182_2
unknown

Not on your lists

630..1073
DNA (444bp) protein (148aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_182_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1046..2572)
DNA (1527bp) protein (509aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase id=1352866 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
scnpilot_expt_750_bf_scaffold_182_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2535..3893)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HPP7_PSEST rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM77352.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutz
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_182_5
unknown

Not on your lists

4101..4301
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_182_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4542..5714
DNA (1173bp) protein (391aa)
Short chain amide porin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N1_NITMU rbh
hypothetical protein
Short chain amide porin {ECO:0000313|EMBL:ABB74540.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
scnpilot_expt_750_bf_scaffold_182_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5846..6793
DNA (948bp) protein (316aa)
Urease accessory protein UreD n=1 Tax=Nitrosospira sp. NpAV RepID=Q7BBX8_9PROT rbh
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
Urease accessory protein UreD
scnpilot_expt_750_bf_scaffold_182_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6901..7203
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {
urease subunit gamma (EC:3.5.1.5)
Urease subunit gamma n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GBA9_9PROT
scnpilot_expt_750_bf_scaffold_182_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7218..7541
DNA (324bp) protein (108aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=58133 species="Bacteria;
urease subunit beta (EC:3.5.1.5)
Urease subunit beta n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH76_9PROT
scnpilot_expt_750_bf_scaffold_182_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7581..9287
DNA (1707bp) protein (569aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953
urease subunit alpha (EC:3.5.1.5) rbh
Urease subunit alpha n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH75_9PROT rbh
scnpilot_expt_750_bf_scaffold_182_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9297..9833
DNA (537bp) protein (179aa)
Urease accessory protein UreE n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH74_9PROT
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae;
UreE urease accessory domain-containing protein
scnpilot_expt_750_bf_scaffold_182_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9842..10528
DNA (687bp) protein (229aa)
Urease accessory protein UreF n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH73_9PROT rbh
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
urease accessory protein ureF rbh
scnpilot_expt_750_bf_scaffold_182_13
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10564..11208
DNA (645bp) protein (215aa)
Urease accessory protein UreG n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZD05_9PROT rbh
urease accessory protein ureG
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitros
scnpilot_expt_750_bf_scaffold_182_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11329..12285
DNA (957bp) protein (319aa)
Urea transporter n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZD04_9PROT rbh
Urea transporter {ECO:0000313|EMBL:KIO47922.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urea transporter
scnpilot_expt_750_bf_scaffold_182_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12380..13015)
DNA (636bp) protein (212aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N3_NITMU rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIO48978.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
two component LuxR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_182_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13181..15151)
DNA (1971bp) protein (657aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N2_NITMU rbh
periplasmic sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_182_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15345..15836
DNA (492bp) protein (164aa)
MutT-like protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJR7_9PROT
MutT-like protein {ECO:0000313|EMBL:CCU62728.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NUDIX hydrolase
scnpilot_expt_750_bf_scaffold_182_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16092..17345
DNA (1254bp) protein (418aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
Glutamyl-tRNA reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU3_9PROT rbh
hemA; glutamyl-tRNA reductase
scnpilot_expt_750_bf_scaffold_182_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17342..18418
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL32_9PROT rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093, ECO:0000313|EMBL:KIO49738.1}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteob
prfA; peptide chain release factor 1
scnpilot_expt_750_bf_scaffold_182_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18361..19416
DNA (1056bp) protein (352aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5P4_NITMU rbh
HemK family modification methylase
scnpilot_expt_750_bf_scaffold_182_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19529..19837
DNA (309bp) protein (103aa)
Glutaredoxin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJQ8_9PROT
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glutaredoxin-like protein
scnpilot_expt_750_bf_scaffold_182_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19956..20378)
DNA (423bp) protein (141aa)
Putative membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL60_9PROT
Putative membrane protein {ECO:0000313|EMBL:CCU63662.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
hypothetical protein
scnpilot_expt_750_bf_scaffold_182_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20518..21312
DNA (795bp) protein (265aa)
Coenzyme PQQ synthesis C n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5P8_NITMU rbh
coenzyme PQQ synthesis C
Coenzyme PQQ synthesis C {ECO:0000313|EMBL:ABB75923.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mu
scnpilot_expt_750_bf_scaffold_182_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21404..22318)
DNA (915bp) protein (305aa)
Transcriptional activator MetR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJQ6_9PROT rbh
Transcriptional activator MetR {ECO:0000313|EMBL:CCU62987.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
LysR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_182_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22435..24774
DNA (2340bp) protein (780aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:S
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHY9_9PROT rbh
scnpilot_expt_750_bf_scaffold_182_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24760..27369)
DNA (2610bp) protein (870aa)
PII uridylyl-transferase (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJP9_9PROT rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
scnpilot_expt_750_bf_scaffold_182_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27457..28257)
DNA (801bp) protein (267aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:KIO50132.1}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {EC
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKB4_9PROT rbh
scnpilot_expt_750_bf_scaffold_182_28
unknown

Not on your lists

comp(28345..28593)
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_182_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28606..29223)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI12_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO50133.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_182_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29313..29972
DNA (660bp) protein (220aa)
Cytochrome c4 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUE9_9PROT rbh
Cytochrome c4 {ECO:0000313|EMBL:CCU63010.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome c, class I
Displaying items 1-30 of 240 in total

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