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scnpilot_expt_750_bf_scaffold_250

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_250_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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464..2746
DNA (2283bp) protein (761aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=58133 species="Bacteria; Pr
Replication restart DNA helicase PriA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6K3_NITMU rbh
primosomal protein N'
scnpilot_expt_750_bf_scaffold_250_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2853..3755)
DNA (903bp) protein (301aa)
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL20_9PROT rbh
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation {ECO:0000313|EMBL:CCU63644.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
fructosamine kinase
scnpilot_expt_750_bf_scaffold_250_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3771..5036)
DNA (1266bp) protein (422aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT1_9PROT rbh
scnpilot_expt_750_bf_scaffold_250_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5390..7000)
DNA (1611bp) protein (537aa)
Peptide chain release factor 3 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6K0_NITMU rbh
prfC; peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=323848 species="Bacteria; Proteobacteria; Betaprot
scnpilot_expt_750_bf_scaffold_250_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7018..9153)
DNA (2136bp) protein (712aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J9_NITMU rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO49244.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitro
oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
scnpilot_expt_750_bf_scaffold_250_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9167..10654)
DNA (1488bp) protein (496aa)
Oligopeptide transport system permease protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWI4_9PROT rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:KIO49245.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
binding-protein dependent transport system inner membrane protein
scnpilot_expt_750_bf_scaffold_250_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10673..11650)
DNA (978bp) protein (326aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J7_NITMU rbh
binding-protein dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABB75624.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
scnpilot_expt_750_bf_scaffold_250_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11643..13874)
DNA (2232bp) protein (744aa)
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLS7_9PROT rbh
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO49454.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;"
extracellular solute-binding protein
scnpilot_expt_750_bf_scaffold_250_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13938..14795
DNA (858bp) protein (286aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitroso
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJN9_9PROT rbh
Short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_bf_scaffold_250_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14805..16697)
DNA (1893bp) protein (631aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148, ECO:0000313|EMBL:KIO49248.1}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; N
Peptidyl-prolyl cis-trans isomerase PpiD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWH4_9PROT rbh
PpiC-type peptidyl-prolyl cis-trans isomerase
scnpilot_expt_750_bf_scaffold_250_trna_3
unknown

Not on your lists

comp(16761..16834)
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_250_trna_2
unknown

Not on your lists

comp(16859..16931)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_250_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16943..17215)
DNA (273bp) protein (91aa)
DNA-binding protein HU-beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL13_9PROT
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KIO49249.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source
histone-like DNA-binding protein
scnpilot_expt_750_bf_scaffold_250_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18017..20431)
DNA (2415bp) protein (805aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL37_9PROT rbh
scnpilot_expt_750_bf_scaffold_250_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20515..21792)
DNA (1278bp) protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJN3_9PROT rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadale
clpX; ATP-dependent protease ATP-binding subunit ClpX
scnpilot_expt_750_bf_scaffold_250_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21864..22508)
DNA (645bp) protein (215aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWG3_9PROT rbh
scnpilot_expt_750_bf_scaffold_250_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22510..23814)
DNA (1305bp) protein (435aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL10_9PROT rbh
tig; trigger factor
scnpilot_expt_750_bf_scaffold_250_trna_1
unknown

Not on your lists

comp(23935..24016)
DNA (82bp)
transferRNA
scnpilot_expt_750_bf_scaffold_250_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24152..24931)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6I8_NITMU rbh
Short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABB75633.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
scnpilot_expt_750_bf_scaffold_250_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25022..25867)
DNA (846bp) protein (282aa)
Phytoene synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL33_9PROT rbh
Phytoene synthase {ECO:0000313|EMBL:KIO49254.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;
squalene/phytoene synthase
scnpilot_expt_750_bf_scaffold_250_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26236..27891)
DNA (1656bp) protein (552aa)
60 kDa chaperonin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWF4_9PROT rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=58133 specie
groEL; chaperonin GroEL
scnpilot_expt_750_bf_scaffold_250_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27944..28234)
DNA (291bp) protein (97aa)
10 kDa chaperonin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=CH10_NITMU
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000255|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000255|HAMAP-Rule:MF_00580}; TaxID=323848 species="Bacteria; Proteobacteria; B
scnpilot_expt_750_bf_scaffold_250_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28543..30057
DNA (1515bp) protein (505aa)
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJK8_9PROT rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KIO49456.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitro
scnpilot_expt_750_bf_scaffold_250_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30149..31630)
DNA (1482bp) protein (494aa)
Anthranilate synthase component I {ECO:0000313|EMBL:KIO49260.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIO49260.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitros
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase, aminase component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLP7_9PROT rbh
scnpilot_expt_750_bf_scaffold_250_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31772..32500)
DNA (729bp) protein (243aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitro
Phosphoglycolate phosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL15_9PROT rbh
phosphoglycolate phosphatase
scnpilot_expt_750_bf_scaffold_250_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32616..33299)
DNA (684bp) protein (228aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitro
Ribulose-phosphate 3-epimerase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6G1_NITMU rbh
scnpilot_expt_750_bf_scaffold_250_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33505..33888
DNA (384bp) protein (128aa)
Protein ApaG n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=APAG_NITMU
apaG; ApaG protein
Protein ApaG {ECO:0000255|HAMAP-Rule:MF_00791}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformi
scnpilot_expt_750_bf_scaffold_250_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33964..35367)
DNA (1404bp) protein (468aa)
GTPase Der n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKY3_9PROT rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacter
engA; GTP-binding protein EngA
scnpilot_expt_750_bf_scaffold_250_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35453..36853)
DNA (1401bp) protein (467aa)
Outer membrane protein assembly factor BamB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLP3_9PROT rbh
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
Pyrrolo-quinoline quinone
scnpilot_expt_750_bf_scaffold_250_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37157..37816)
DNA (660bp) protein (220aa)
Mlr7403 protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJJ8_9PROT rbh
Mlr7403 protein {ECO:0000313|EMBL:CCU63596.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
Displaying items 1-30 of 99 in total

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