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scnpilot_expt_750_bf_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_324_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(516..977)
DNA (462bp) protein (154aa)
Putative exported protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFI5_9PROT
Putative exported protein {ECO:0000313|EMBL:CCU61951.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
Cna B domain-containing protein
scnpilot_expt_750_bf_scaffold_324_2
unknown

Not on your lists

comp(989..1303)
DNA (315bp) protein (105aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1886..2827)
DNA (942bp) protein (314aa)
Bile acid:sodium symporter n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GIV2_NITSI rbh
Transporter {ECO:0000313|EMBL:KIO48507.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Bile acid:sodium symporter
scnpilot_expt_750_bf_scaffold_324_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2836..3582)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFI9_9PROT rbh
Methyltransferase type 12 {ECO:0000313|EMBL:KIO48506.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp
hypothetical protein
scnpilot_expt_750_bf_scaffold_324_5
unknown

Not on your lists

4226..4369
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_6
unknown

Not on your lists

4831..5328
DNA (498bp) protein (166aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5618..6538
DNA (921bp) protein (307aa)
RNA polymerase sigma factor RpoS n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF55_9PROT
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=58133 species="Bacteria; Proteobacteria
RNA polymerase sigma factor RpoS
scnpilot_expt_750_bf_scaffold_324_8
unknown

Not on your lists

comp(6444..7028)
DNA (585bp) protein (195aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_9
unknown

Not on your lists

7130..7252
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7330..8052
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI00036B2249 rbh
hypothetical protein; K07491 putative transposase Tax=CG_Beta_01
hypothetical protein
scnpilot_expt_750_bf_scaffold_324_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8502..9809
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002EF89A4 rbh
NADH dehydrogenase {ECO:0000313|EMBL:GAN80347.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica
FAD-dependent pyridine nucleotide-disulphide
scnpilot_expt_750_bf_scaffold_324_12
unknown

Not on your lists

10012..10212
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10522..10851
DNA (330bp) protein (110aa)
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJP1_9PROT
Cytochrome C {ECO:0000313|EMBL:KIO49515.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c, class I
scnpilot_expt_750_bf_scaffold_324_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10874..11863
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ42_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49516.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_324_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11899..13443
DNA (1545bp) protein (515aa)
4-cresol dehydrogenase [hydroxylating] flavoprotein subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTL4_9PROT rbh
4-cresol dehydrogenase {ECO:0000313|EMBL:KIO49517.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. N
FAD linked oxidase-like protein
scnpilot_expt_750_bf_scaffold_324_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13602..14711
DNA (1110bp) protein (370aa)
xylB; aryl-alcohol dehydrogenase (EC:1.1.1.90)
Aryl-alcohol dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7G9_9BACT rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KIO49647.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. Np
scnpilot_expt_750_bf_scaffold_324_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14813..15091)
DNA (279bp) protein (93aa)
NADPH-dependent FMN reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8P6_NITMU
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABB74875.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_expt_750_bf_scaffold_324_18
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15192..16691)
DNA (1500bp) protein (500aa)
Betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBU5_9SPHN rbh
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:EIZ77618.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
scnpilot_expt_750_bf_scaffold_324_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17331..17624)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48487.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
scnpilot_expt_750_bf_scaffold_324_20
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17989..18207
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI17852.1}; Flags: Fragment;; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitr
scnpilot_expt_750_bf_scaffold_324_21
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18266..18457
DNA (192bp) protein (64aa)
IstB domain protein ATP-binding protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZJB0_THASP
ATP-binding protein {ECO:0000313|EMBL:EWY35666.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiir
IstB domain-containing protein ATP-binding protein
scnpilot_expt_750_bf_scaffold_324_22
unknown

Not on your lists

comp(18567..18824)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_23
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19262..19402
DNA (141bp) protein (47aa)
resolvase domain-containing protein Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
scnpilot_expt_750_bf_scaffold_324_24
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19473..19850
DNA (378bp) protein (126aa)
Transposase n=2 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWC2_AROAE
istA; transposase Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
istA; transposase, OrfA
scnpilot_expt_750_bf_scaffold_324_25
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19859..20797
DNA (939bp) protein (313aa)
Resolvase domain protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z4V7_9NEIS
resolvase domain-containing protein Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
resolvase domain-containing protein
scnpilot_expt_750_bf_scaffold_324_26
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20968..22152
DNA (1185bp) protein (395aa)
Site-specific recombinase XerD n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VNC3_9BURK rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:EJN07612.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspi
integrase family protein
scnpilot_expt_750_bf_scaffold_324_27
unknown

Not on your lists

22223..22882
DNA (660bp) protein (220aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_324_28
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23825..24760
DNA (936bp) protein (312aa)
Virulence-associated protein E n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYL8_9BRAD rbh
Virulence-associated protein E {ECO:0000313|EMBL:EAQ34923.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp
virulence-associated protein E
scnpilot_expt_750_bf_scaffold_324_29
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24753..26711
DNA (1959bp) protein (653aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST72_NITWN rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04519.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winograds
scnpilot_expt_750_bf_scaffold_324_30
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26708..27202
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ31182.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
Displaying items 1-30 of 83 in total

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