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scnpilot_expt_750_bf_scaffold_384

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Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_384_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..531)
DNA (531bp) protein (177aa)
Integrase catalytic region protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU73_ALIDB
integrase catalytic region protein
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_expt_750_bf_scaffold_384_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(595..1947)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA020 RepID=U8SFA9_PSEAI rbh
transposase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
transposase
scnpilot_expt_750_bf_scaffold_384_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2170..2448)
DNA (279bp) protein (93aa)
Transposase IS3/IS911 family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU72_ALIDB
transposase is3/is911 family protein
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_expt_750_bf_scaffold_384_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2493..3200)
DNA (708bp) protein (236aa)
Phage integrase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Z5_NITMU
Phage integrase
Phage integrase {ECO:0000313|EMBL:ABB75476.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis
scnpilot_expt_750_bf_scaffold_384_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3883..4533)
DNA (651bp) protein (217aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902, ECO:0000313|EMBL:KIO50011.1}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacter
phosphoglycolate phosphatase (EC:3.1.3.18)
Similar to phosphoglycolate phosphatase,clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVN5_9PROT rbh
scnpilot_expt_750_bf_scaffold_384_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4696..5412)
DNA (717bp) protein (239aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ26_9PROT rbh
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiqui
scnpilot_expt_750_bf_scaffold_384_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5409..6767)
DNA (1359bp) protein (453aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM5_9PROT rbh
N-ethylammeline chlorohydrolase
scnpilot_expt_750_bf_scaffold_384_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6854..7528)
DNA (675bp) protein (225aa)
OmpA/MotB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Z1_NITMU rbh
Membrane protein {ECO:0000313|EMBL:KIO50014.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
OmpA/MotB
scnpilot_expt_750_bf_scaffold_384_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7831..10377
DNA (2547bp) protein (849aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomo
DNA gyrase subunit A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKJ9_9PROT rbh
DNA gyrase subunit A
scnpilot_expt_750_bf_scaffold_384_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10592..11686
DNA (1095bp) protein (365aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVP0_9PROT rbh
scnpilot_expt_750_bf_scaffold_384_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11679..12878
DNA (1200bp) protein (400aa)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ30_9PROT rbh
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KIO50017.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
D-isomer specific 2-hydroxyacid dehydrogenase
scnpilot_expt_750_bf_scaffold_384_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12901..13965
DNA (1065bp) protein (355aa)
Chorismate mutase I / Prephenate dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL80_9PROT rbh
Prephenate dehydratase {ECO:0000313|EMBL:KIO50018.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. N
chorismate mutase
scnpilot_expt_750_bf_scaffold_384_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14153..15259
DNA (1107bp) protein (369aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
Biosynthetic Aromatic amino acid aminotransferase beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK2_9PROT rbh
histidinol-phosphate aminotransferase
scnpilot_expt_750_bf_scaffold_384_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15275..16291
DNA (1017bp) protein (339aa)
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta {ECO:0000313|EMBL:CCU63405.1}; EC=2.5.1.54 {ECO:0000313|EMBL:CCU63405.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaprote
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVP4_9PROT rbh
phospho-2-dehydro-3-deoxyheptonate aldolase
scnpilot_expt_750_bf_scaffold_384_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16307..17239
DNA (933bp) protein (311aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase {ECO:0000313|EMBL:ABB75487.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ABB75487.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
Prephenate dehydrogenase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Y4_NITMU rbh
scnpilot_expt_750_bf_scaffold_384_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17459..17809
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL83_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63408.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_384_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18031..18399
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ39_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO50121.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_384_18
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

18464..19168
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000374E618
hypothetical protein Tax=RBG_13_Nitrospirae_41_22_curated
scnpilot_expt_750_bf_scaffold_384_19
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19345..20238)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IR67_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGW23714.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylo
hypothetical protein
scnpilot_expt_750_bf_scaffold_384_20
RifOxyB12_full_Planctomycetes_42_10_curated, Planctomycetes, Bacteria

Not on your lists

comp(20385..20750)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WYF9_METML
hypothetical protein Tax=RifOxyB12_full_Planctomycetes_42_10_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_384_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21082..22125)
DNA (1044bp) protein (348aa)
Sodium-dependent transporter n=1 Tax=Nitrosospira sp. APG3 RepID=M5DS26_9PROT rbh
Sodium-dependent transporter {ECO:0000313|EMBL:CCU62190.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
Na+-dependent transporter
scnpilot_expt_750_bf_scaffold_384_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22233..23132)
DNA (900bp) protein (300aa)
H+-transporting two-sector ATPase, gamma subunit n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8H0_NITMU rbh
H+-transporting two-sector ATPase subunit gamma
H+-transporting two-sector ATPase, gamma subunit {ECO:0000313|EMBL:ABB74951.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;"
scnpilot_expt_750_bf_scaffold_384_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23176..24744)
DNA (1569bp) protein (523aa)
F0F1 ATP synthase subunit alpha (EC:3.6.3.14) rbh
ATP synthase subunit alpha 2 {ECO:0000255|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha 2 {ECO:0000255|HAMAP-Rule:MF_01346}; F-ATPase subun
ATP synthase subunit alpha 2 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ATPA2_NITMU rbh
scnpilot_expt_750_bf_scaffold_384_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24741..25640)
DNA (900bp) protein (300aa)
ATP synthase subunit b 2 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) PF2_NITMU">RepID=ATPF2_NITMU rbh
H+-transporting two-sector ATPase subunit B/B' rbh
ATP synthase subunit b 2 {ECO:0000255|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b 2 {ECO:0000255|HAMAP-Rule:MF_01398}; ATPase subunit I 2 {ECO:0000255|HAMAP-Rule:MF_01398}; F-type ATPase
scnpilot_expt_750_bf_scaffold_384_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25644..25925)
DNA (282bp) protein (94aa)
ATP synthase C chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHY3_9PROT
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
F0F1 ATP synthase subunit C
scnpilot_expt_750_bf_scaffold_384_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26002..26706)
DNA (705bp) protein (235aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ATP6_NITMU rbh
ATP synthase subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000255|HAMAP-Rule:MF_01393}; TaxID=323848 species
scnpilot_expt_750_bf_scaffold_384_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26707..27036)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8G5_NITMU
ATPase F0F1 {ECO:0000313|EMBL:KIO48525.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_384_28
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27113..27466)
DNA (354bp) protein (118aa)
F0F1-ATPase subunit, putative n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8G4_NITMU
F0F1-ATPase subunit
F0F1-ATPase subunit, putative {ECO:0000313|EMBL:ABB74957.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;"
scnpilot_expt_750_bf_scaffold_384_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27576..28013)
DNA (438bp) protein (146aa)
F0F1 ATP synthase subunit epsilon (EC:3.6.3.14)
H+-transporting two-sector ATPase, delta/epsilon subunit n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8G3_NITMU
H+-transporting two-sector ATPase, delta/epsilon subunit {ECO:0000313|EMBL:ABB74958.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitroso
scnpilot_expt_750_bf_scaffold_384_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27985..29466)
DNA (1482bp) protein (494aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347, ECO:0000313|EMBL:KIO48383.1};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF
F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHX8_9PROT rbh
Displaying items 1-30 of 126 in total

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