ggKbase home page

scnpilot_expt_750_bf_scaffold_464

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_464_1
unknown

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_464_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

382..1191
DNA (810bp) protein (270aa)
Zn-dependent protease with chaperone function PA4632 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR8_9PROT rbh
Peptidase M48 {ECO:0000313|EMBL:KIO49059.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M48, Ste24p
scnpilot_expt_750_bf_scaffold_464_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1266..2447)
DNA (1182bp) protein (394aa)
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:CCU63492.1}; EC=2.5.1.48 {ECO:0000313|EMBL:CCU63492.1};; EC=2.5.1.49 {ECO:0000313|EMBL:CCU63492.1};; TaxID=12884
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48)
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT5_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2754..4274)
DNA (1521bp) protein (507aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLF1_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4396..4905)
DNA (510bp) protein (170aa)
Colicin V production protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR2_9PROT
Colicin V production protein {ECO:0000313|EMBL:CCU63494.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
colicin V production protein
scnpilot_expt_750_bf_scaffold_464_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4938..5696)
DNA (759bp) protein (253aa)
DedD protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVY7_9PROT
DedD protein {ECO:0000313|EMBL:CCU63495.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
sporulation related
scnpilot_expt_750_bf_scaffold_464_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5671..6996)
DNA (1326bp) protein (442aa)
Dihydrofolate synthase / Folylpolyglutamate synthase {ECO:0000313|EMBL:CCU63496.1}; EC=6.3.2.12 {ECO:0000313|EMBL:CCU63496.1};; EC=6.3.2.17 {ECO:0000313|EMBL:CCU63496.1};; TaxID=1288494 species="Bacte
Dihydrofolate synthase / Folylpolyglutamate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ98_9PROT rbh
FolC bifunctional protein
scnpilot_expt_750_bf_scaffold_464_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7233..8102)
DNA (870bp) protein (290aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT9_9PROT rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
acetyl-CoA carboxylase, carboxyl transferase subunit beta
scnpilot_expt_750_bf_scaffold_464_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8163..8984)
DNA (822bp) protein (274aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=58133 species="Ba
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLF7_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9001..10197)
DNA (1197bp) protein (399aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR6_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10184..10807)
DNA (624bp) protein (208aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVZ2_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10915..11763)
DNA (849bp) protein (283aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA4_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12092..13045)
DNA (954bp) protein (318aa)
Possible transmembrane protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7R1_NITMU
transmembrane protein
Possible transmembrane protein {ECO:0000313|EMBL:ABB75210.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
scnpilot_expt_750_bf_scaffold_464_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13063..14175)
DNA (1113bp) protein (371aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLG3_9PROT rbh
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:M
scnpilot_expt_750_bf_scaffold_464_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14314..15375)
DNA (1062bp) protein (354aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKS0_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15564..16202)
DNA (639bp) protein (213aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000256|SAAS:SAAS00089872};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rul
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVZ8_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16394..17803)
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU5_9PROT rbh
scnpilot_expt_750_bf_scaffold_464_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17909..19066)
DNA (1158bp) protein (386aa)
Nucleoside:H+ symporter:Major facilitator superfamily n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLG7_9PROT rbh
MFS transporter {ECO:0000313|EMBL:KIO49032.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
major facilitator transporter
scnpilot_expt_750_bf_scaffold_464_19
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19971..20204
DNA (234bp) protein (78aa)
TIGR03440 family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TPC0_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_464_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20201..21181
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Q1_NITMU rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75220.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
scnpilot_expt_750_bf_scaffold_464_21
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

21725..22408
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000374E618
hypothetical protein Tax=RBG_13_Nitrospirae_41_22_curated
scnpilot_expt_750_bf_scaffold_464_22
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22566..23240
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Vitreoscilla stercoraria RepID=UPI000366AFC5
type 11 methyltransferase
Type 11 methyltransferase {ECO:0000313|EMBL:BAO28756.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrog
scnpilot_expt_750_bf_scaffold_464_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23595..24353
DNA (759bp) protein (253aa)
Integral membrane protein TerC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJB3_9PROT rbh
Integral membrane protein TerC {ECO:0000313|EMBL:CCU63511.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
integral membrane protein TerC
scnpilot_expt_750_bf_scaffold_464_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24375..26240
DNA (1866bp) protein (622aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU9_9PROT rbh
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein
hypothetical protein
scnpilot_expt_750_bf_scaffold_464_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26318..26479)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLH5_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCU63518.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
scnpilot_expt_750_bf_scaffold_464_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26779..27999)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIZ3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU62659.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_464_27
unknown

Not on your lists

comp(28371..28550)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_464_28
unknown

Not on your lists

comp(28821..29444)
DNA (624bp) protein (208aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_464_29
unknown

Not on your lists

29685..30248
DNA (564bp) protein (188aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_464_30
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30376..30636)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7P5_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75226.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
Displaying items 1-30 of 71 in total

View Taxonomy