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scnpilot_expt_750_bf_scaffold_528

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_528_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2..88
DNA (87bp) protein (29aa)
Transposase, IS4 family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBE3_NITMU
transposase IS4
Transposase, IS4 family {ECO:0000313|EMBL:ABB73928.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
scnpilot_expt_750_bf_scaffold_528_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(420..1607)
DNA (1188bp) protein (396aa)
Integral membrane proteins containing uncharacterized repeats-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB21_NITMU
hypothetical protein
Integral membrane proteins containing uncharacterized repeats-like protein {ECO:0000313|EMBL:ABB74050.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitroso
scnpilot_expt_750_bf_scaffold_528_3
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2012..2320)
DNA (309bp) protein (103aa)
Toxin MazF {ECO:0000313|EMBL:CEH48636.1}; EC=3.1.-.- {ECO:0000313|EMBL:CEH48636.1};; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas
MazF-like predicted growth inhibitor,ccdB family n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XK84_9XANT
Growth inhibitor
scnpilot_expt_750_bf_scaffold_528_4
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2335..2553)
DNA (219bp) protein (73aa)
Uncharacterized protein n=5 Tax=Xanthomonas RepID=Q8PRJ9_XANAC
Protein of unknown function (DUF3018)
Uncharacterized protein {ECO:0000313|EMBL:CCF69615.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axono
scnpilot_expt_750_bf_scaffold_528_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3497..4723
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61517.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
nidogen, extracellular region
scnpilot_expt_750_bf_scaffold_528_6
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4846..5430)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ8_9PROT
PEP-CTERM motif protein {ECO:0000313|EMBL:KFB73879.1}; Flags: Precursor;; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulib
hypothetical protein
scnpilot_expt_750_bf_scaffold_528_7
unknown

Not on your lists

5757..6263
DNA (507bp) protein (169aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_528_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6771..8468)
DNA (1698bp) protein (566aa)
Glycerone kinase (EC:2.7.1.29)
Glycerone kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5F8_NITMU rbh
Dihydroxyacetone kinase {ECO:0000313|EMBL:KIO49461.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
scnpilot_expt_750_bf_scaffold_528_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8564..9166)
DNA (603bp) protein (201aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJY3_9PROT rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCU63124.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
slmA; nucleoid occlusion protein
scnpilot_expt_750_bf_scaffold_528_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9228..10169)
DNA (942bp) protein (314aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375, ECO:0000313|EMBL:KIO48956.1}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=58133 species="Bact
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM0_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10203..13385)
DNA (3183bp) protein (1061aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIE6_9PROT rbh
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:CCU63121.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitr
CzcA family heavy metal efflux pump
scnpilot_expt_750_bf_scaffold_528_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13389..14552)
DNA (1164bp) protein (388aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUS8_9PROT rbh
Cation transporter {ECO:0000313|EMBL:KIO48957.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_528_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14549..15649)
DNA (1101bp) protein (367aa)
Heavy metal RND efflux outer membrane protein,CzcC family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJX9_9PROT rbh
Heavy metal RND efflux outer membrane protein,CzcC family {ECO:0000313|EMBL:CCU63119.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitro
Outer membrane efflux protein
scnpilot_expt_750_bf_scaffold_528_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16279..17211
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA08_NITMU rbh
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB74413.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
scnpilot_expt_750_bf_scaffold_528_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17282..19219)
DNA (1938bp) protein (646aa)
Chaperone protein HtpG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKL5_9PROT rbh
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:M
heat shock protein 90
scnpilot_expt_750_bf_scaffold_528_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19390..20511
DNA (1122bp) protein (374aa)
L-sorbosone dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK08_9PROT rbh
L-sorbosone dehydrogenase {ECO:0000313|EMBL:CCU63117.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
putative membrane-bound dehydrogenase oxidoreductase protein
scnpilot_expt_750_bf_scaffold_528_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20707..22158)
DNA (1452bp) protein (484aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit
NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKL1_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22199..23683)
DNA (1485bp) protein (495aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:KIO48964.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48964.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase chain M n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK02_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23793..25748)
DNA (1956bp) protein (652aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:CCU63111.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63111.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
proton-translocating NADH-quinone oxidoreductase, chain L (EC:1.6.99.5)
NADH-ubiquinone oxidoreductase chain L n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID3_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25822..26127)
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456, ECO:0000313|EMBL:KIO48965.1}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-
NADH-quinone oxidoreductase subunit K n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GIS7_NITSI
NAD(P)H-quinone oxidoreductase subunit 4L
scnpilot_expt_750_bf_scaffold_528_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26179..26784)
DNA (606bp) protein (202aa)
NADH-ubiquinone oxidoreductase chain J {ECO:0000313|EMBL:CCU63109.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63109.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
NADH-ubiquinone oxidoreductase chain J n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJX2_9PROT rbh
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
scnpilot_expt_750_bf_scaffold_528_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26803..27291)
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit
NADH dehydrogenase subunit I (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ8_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27305..28405)
DNA (1101bp) protein (367aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48968.1};; NADH dehydrogenase I subunit H {ECO
NADH-quinone oxidoreductase subunit H n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIC7_9PROT rbh
respiratory-chain NADH dehydrogenase subunit 1
scnpilot_expt_750_bf_scaffold_528_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28437..30872)
DNA (2436bp) protein (812aa)
NADH-ubiquinone oxidoreductase chain G {ECO:0000313|EMBL:CCU63105.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63105.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase chain G n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUQ5_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30963..32240)
DNA (1278bp) protein (426aa)
NADH dehydrogenase {ECO:0000313|EMBL:KIO48970.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48970.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Ni
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH-ubiquinone oxidoreductase chain F n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW9_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32237..32713)
DNA (477bp) protein (159aa)
NADH-ubiquinone oxidoreductase chain E {ECO:0000313|EMBL:CCU63103.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63103.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
NADH dehydrogenase subunit E (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase chain E n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK1_9PROT
scnpilot_expt_750_bf_scaffold_528_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32745..33998)
DNA (1254bp) protein (418aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit
NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ3_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34020..34634)
DNA (615bp) protein (205aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit
NADH dehydrogenase subunit C (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit C n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIB8_9PROT rbh
scnpilot_expt_750_bf_scaffold_528_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34646..35122)
DNA (477bp) protein (159aa)
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48974.1};; NADH dehydrogenase I subunit B {ECO
NADH-quinone oxidoreductase subunit B 2 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=NUOB2_NITMU rbh
scnpilot_expt_750_bf_scaffold_528_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35127..35483)
DNA (357bp) protein (119aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit
NADH-quinone oxidoreductase subunit A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW5_9PROT
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
Displaying items 1-30 of 35 in total

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