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scnpilot_expt_750_bf_scaffold_730

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_730_1
unknown

Not on your lists

3..233
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_730_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1110..1901
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU4_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63539.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2154..2543
DNA (390bp) protein (130aa)
COGs COG0226 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW38_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49069.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2524..3786
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJE2_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63541.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3798..6728
DNA (2931bp) protein (977aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW8_9PROT rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIO49010.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV
diguanylate cyclase/phosphodiesterase
scnpilot_expt_750_bf_scaffold_730_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6813..8174)
DNA (1362bp) protein (454aa)
Putative sensory histidine kinase YfhA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK59_9PROT rbh
Putative sensory histidine kinase YfhA {ECO:0000313|EMBL:CCU63172.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
two component sigma-54 specific Fis family transcriptional regulator
scnpilot_expt_750_bf_scaffold_730_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8185..8721)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9V8_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74463.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
scnpilot_expt_750_bf_scaffold_730_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8712..10223)
DNA (1512bp) protein (504aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae
Putative sensor-like histidine kinase YfhK n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUZ1_9PROT rbh
periplasmic sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_730_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11028..11381)
DNA (354bp) protein (118aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
Arsenate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR0_9PROT
arsenate reductase-like protein
scnpilot_expt_750_bf_scaffold_730_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11440..13149)
DNA (1710bp) protein (570aa)
TrkA-N:Sodium/hydrogen exchanger n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII6_9PROT rbh
Sodium:proton antiporter {ECO:0000313|EMBL:KIO48924.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
TrkA-N:Sodium/hydrogen exchanger
scnpilot_expt_750_bf_scaffold_730_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13369..14286)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK20_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48990.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
peptidase M10A and M12B matrixin and adamalysin
scnpilot_expt_750_bf_scaffold_730_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14315..15424)
DNA (1110bp) protein (370aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonada
Alanine dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKQ6_9PROT rbh
alanine dehydrogenase
scnpilot_expt_750_bf_scaffold_730_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15634..16386)
DNA (753bp) protein (251aa)
Dienelactone hydrolase family protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W4_NITMU rbh
dienelactone hydrolase family protein
Dienelactone hydrolase family protein {ECO:0000313|EMBL:ABB74457.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Ni
scnpilot_expt_750_bf_scaffold_730_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16499..17878)
DNA (1380bp) protein (460aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}
NAD(P) transhydrogenase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII3_9PROT rbh
NAD(P) transhydrogenase subunit beta
scnpilot_expt_750_bf_scaffold_730_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17882..18187)
DNA (306bp) protein (102aa)
Probable transmembrane NAD(P) transhydrogenase (Alpha subunit part 2) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W6_NITMU
Pyridine nucleotide transhydrogenase {ECO:0000313|EMBL:KIO48926.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
transmembrane NAD(P) transhydrogenase (subunit alpha part 2)
scnpilot_expt_750_bf_scaffold_730_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18231..19358)
DNA (1128bp) protein (376aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W7_NITMU rbh
NADP transhydrogenase subunit alpha {ECO:0000313|EMBL:KIO48927.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitro
scnpilot_expt_750_bf_scaffold_730_17
unknown

Not on your lists

19677..19850
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_730_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19914..23159)
DNA (3246bp) protein (1082aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W8_NITMU rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB74453.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23632..24915)
DNA (1284bp) protein (428aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase la
Sulfate adenylyltransferase, large subunit (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK45_9PROT rbh
scnpilot_expt_750_bf_scaffold_730_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25004..26026)
DNA (1023bp) protein (341aa)
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732, ECO:0000313|EMBL:KIO48991.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUX1_9PROT rbh
scnpilot_expt_750_bf_scaffold_730_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26035..26868)
DNA (834bp) protein (278aa)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] {ECO:0000313|EMBL:CCU63154.1}; EC=1.8.4.10 {ECO:0000313|EMBL:CCU63154.1};; EC=1.8.4.8 {ECO:0000313|EMBL:CCU63
phosphoadenosine phosphosulfate reductase (EC:1.8.4.8)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK09_9PROT rbh
scnpilot_expt_750_bf_scaffold_730_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26917..29010)
DNA (2094bp) protein (698aa)
Ferredoxin--sulfite reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKP7_9PROT rbh
Nitrite reductase {ECO:0000313|EMBL:KIO48931.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;
nitrite and sulfite reductase 4Fe-4S region
scnpilot_expt_750_bf_scaffold_730_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29196..30122
DNA (927bp) protein (309aa)
Cys regulon transcriptional activator CysB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK41_9PROT rbh
CysB family transcriptional regulator {ECO:0000313|EMBL:KIO48932.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
transcriptional regulator CysB-like protein
scnpilot_expt_750_bf_scaffold_730_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30348..32228
DNA (1881bp) protein (627aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X4_NITMU rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadacea
DNA mismatch repair protein MutL
scnpilot_expt_750_bf_scaffold_730_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32581..33696
DNA (1116bp) protein (372aa)
Putative cytoplasmic protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUW5_9PROT rbh
Putative cytoplasmic protein {ECO:0000313|EMBL:CCU63150.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33964..34188
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X6_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74445.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
scnpilot_expt_750_bf_scaffold_730_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34388..34588
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48936.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
scnpilot_expt_750_bf_scaffold_730_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34742..35023
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIH2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63146.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_730_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35522..36295)
DNA (774bp) protein (258aa)
Beta-lactamase-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X9_NITMU rbh
beta-lactamase-like protein
Beta-lactamase-like protein {ECO:0000313|EMBL:ABB74442.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
scnpilot_expt_750_bf_scaffold_730_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36451..38538)
DNA (2088bp) protein (696aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN8_9PROT rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU63143.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
sensory box protein
Displaying items 1-30 of 50 in total

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