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scnpilot_expt_750_bf_scaffold_854

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_854_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..97
DNA (96bp) protein (32aa)
Elongation factor Tu {ECO:0000313|EMBL:KIX43844.1}; EC=3.6.5.3 {ECO:0000313|EMBL:KIX43844.1};; Flags: Fragment;; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Bur
Translation elongation factor Tu n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UGL0_RALSL
elongation factor Tu C-terminal domain protein
scnpilot_expt_750_bf_scaffold_854_trna_1
unknown

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187..259
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_854_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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424..771
DNA (348bp) protein (116aa)
Protein translocase subunit SecE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHT0_9PROT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
secE; preprotein translocase subunit SecE
scnpilot_expt_750_bf_scaffold_854_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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771..1304
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHH2_9PROT rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitros
nusG; transcription antitermination protein NusG
scnpilot_expt_750_bf_scaffold_854_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1405..1836
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL11_NITMU
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
rplK; 50S ribosomal protein L11
scnpilot_expt_750_bf_scaffold_854_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1839..2531
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR80_9PROT rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
rplA; 50S ribosomal protein L1
scnpilot_expt_750_bf_scaffold_854_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3049..3573
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL10_NITMU
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_expt_750_bf_scaffold_854_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3638..4018
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG8_9PROT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitros
rplL; 50S ribosomal protein L7/L12
scnpilot_expt_750_bf_scaffold_854_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4189..8262
DNA (4074bp) protein (1358aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFH7_9PROT rbh
scnpilot_expt_750_bf_scaffold_854_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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8373..12602
DNA (4230bp) protein (1410aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleB
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR75_9PROT rbh
scnpilot_expt_750_bf_scaffold_854_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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12890..14302
DNA (1413bp) protein (471aa)
Aminotransferase {ECO:0000313|EMBL:ABB74068.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABB74068.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
Aminotransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB03_NITMU rbh
class III aminotransferase
scnpilot_expt_750_bf_scaffold_854_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14690..15067
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS12_NITMU
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
rpsL; 30S ribosomal protein S12
scnpilot_expt_750_bf_scaffold_854_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15141..15611
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS7_NITMU rbh
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
scnpilot_expt_750_bf_scaffold_854_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15718..17808
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHB0_9PROT rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000313|EMBL:KIO47920.1}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Ni
fusA; elongation factor G
scnpilot_expt_750_bf_scaffold_854_14
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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17833..17922
DNA (90bp) protein (30aa)
Elongation factor Tu n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWV0_9GAMM
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacte
Displaying 15 items

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