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scnpilot_expt_750_bf_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_252_1
unknown

Not on your lists

388..480
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_252_trna_2
unknown

Not on your lists

comp(552..624)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_252_2
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(663..1859)
DNA (1197bp) protein (399aa)
Aromatic-amino-acid aminotransferase {ECO:0000313|EMBL:KFB67727.1}; EC=2.6.1.57 {ECO:0000313|EMBL:KFB67727.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumuli
Aspartate aminotransferase n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BG69_9NEIS
aspartate/tyrosine/aromatic aminotransferase
scnpilot_expt_750_bf_scaffold_252_3
Ralstonia syzygii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2177..4300
DNA (2124bp) protein (708aa)
UvrABC system protein B n=1 Tax=Ralstonia syzygii R24 RepID=G3A672_9RALS rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
uvrB; ATP-dependent DNA excision repair enzyme, DNA damage recognition component
scnpilot_expt_750_bf_scaffold_252_4
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4344..4865
DNA (522bp) protein (174aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWH1_9BURK
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EFV95346.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia
ptpA; low molecular weight protein-tyrosine-phosphatase
scnpilot_expt_750_bf_scaffold_252_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5130..5660
DNA (531bp) protein (177aa)
Iron-sulfur cluster assembly transcription factor IscR n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWH0_9BURK
Iron-sulfur cluster assembly transcription factor IscR {ECO:0000313|EMBL:EFV95345.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;
iscR; iron-sulfur cluster assembly transcription factor IscR
scnpilot_expt_750_bf_scaffold_252_6
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5677..6000
DNA (324bp) protein (108aa)
heme biosynthesis protein HemY n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003718DED
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:KFB73670.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter
iron binding protein IscA for iron-sulfur cluster assembly
scnpilot_expt_750_bf_scaffold_252_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6233..7243
DNA (1011bp) protein (337aa)
ccp; cytochrome c551 peroxidase (EC:1.11.1.5)
cytochrome C biogenesis protein CcsA n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000374C223 rbh
Putative cytochrome c peroxidase {ECO:0000313|EMBL:EGJ09067.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA
scnpilot_expt_750_bf_scaffold_252_8
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7269..8498)
DNA (1230bp) protein (410aa)
Major facilitator superfamily protein 54 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SY34_ALCXX
Major facilitator superfamily protein 54 {ECO:0000313|EMBL:EGP47030.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="A
hypothetical protein
scnpilot_expt_750_bf_scaffold_252_9
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8570..10153)
DNA (1584bp) protein (528aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00252}; EC=6.1.1.6 {ECO:0000255|HAMAP-Rule:MF_00252};; Lysyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00252}; Short=LysRS {ECO:0000255|HAMAP-Rule:MF_00
Lysine--tRNA ligase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=SYK_BORPD
scnpilot_expt_750_bf_scaffold_252_10
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10157..11149)
DNA (993bp) protein (331aa)
Peptide chain release factor 2 n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IIM7_9BURK rbh
peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=243261 species="Bacteria; Proteobacteria; Betaprot
scnpilot_expt_750_bf_scaffold_252_11

Not on your lists

comp(11292..13088)
DNA (1797bp) protein (599aa)
Single-stranded-DNA-specific exonuclease recJ {ECO:0000313|EMBL:CBH96609.1}; EC=3.1.-.- {ECO:0000313|EMBL:CBH96609.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenome
recJ; Single-stranded-DNA-specific exonuclease recJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease recJ n=1 Tax=mine drainage metagenome RepID=E6PNV7_9ZZZZ
scnpilot_expt_750_bf_scaffold_252_12
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13085..14209)
DNA (1125bp) protein (375aa)
regulator n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00036012CD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EON21624.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.
scnpilot_expt_750_bf_scaffold_252_13
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14243..15499
DNA (1257bp) protein (419aa)
Lipoprotein releasing system transmembrane protein LolC n=2 Tax=Ralstonia solanacearum RepID=M4UBQ9_RALSL
lolC; Lipoprotein releasing system transmembrane protein LolC
Lipoprotein releasing system transmembrane protein LolC {ECO:0000313|EMBL:AGH83659.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia
scnpilot_expt_750_bf_scaffold_252_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15496..16257
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D50D5
lolD; lolD; lipoprotein releasing system ATP-binding ABC transporter Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
lipoprotein releasing system, ATP-binding protein
scnpilot_expt_750_bf_scaffold_252_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16334..17341
DNA (1008bp) protein (336aa)
Putative secreted protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5Y5_VARPE
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37157.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
hypothetical protein
scnpilot_expt_750_bf_scaffold_252_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17507..19081
DNA (1575bp) protein (525aa)
Hydrolase id=4085397 bin=GWA2_Methylomirabilis_73_35 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hydrolase Tax=GWA2_Rokubacteria_73_35_curated
hydrolase
scnpilot_expt_750_bf_scaffold_252_17
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19075..19899
DNA (825bp) protein (275aa)
Hydrolase, TatD family {ECO:0000313|EMBL:EFF74673.1}; EC=3.1.21.- {ECO:0000313|EMBL:EFF74673.1};; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; A
DNAase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CE200
DNAase
scnpilot_expt_750_bf_scaffold_252_18
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19877..20296)
DNA (420bp) protein (140aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SM84_METPP
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD {ECO:0000313|EMBL:EWS52794.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
scnpilot_expt_750_bf_scaffold_252_19
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20310..21065)
DNA (756bp) protein (252aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWH1_LEPCP rbh
MotA/TolQ/ExbB proton channel rbh
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ACB33839.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATC
scnpilot_expt_750_bf_scaffold_252_20
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21070..21837)
DNA (768bp) protein (256aa)
Periplasmic protein/ biopolymer transport n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SM82_METPP
tonB; periplasmic protein/biopolymer transport
Periplasmic protein/ biopolymer transport {ECO:0000313|EMBL:ABM96671.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petrole
scnpilot_expt_750_bf_scaffold_252_21
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22005..24581
DNA (2577bp) protein (859aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W364_9BURK
DNA internalization-related competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:CDG82826.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthin
scnpilot_expt_750_bf_scaffold_252_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24655..25437)
DNA (783bp) protein (261aa)
bdhA; D-beta-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
bdhA; 3-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
3-hydroxybutyrate dehydrogenase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D83614
scnpilot_expt_750_bf_scaffold_252_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25483..26370
DNA (888bp) protein (296aa)
Alpha/beta hydrolase fold n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0Q7_LEPCP
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
alpha/beta hydrolase fold protein
scnpilot_expt_750_bf_scaffold_252_24
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26367..26717
DNA (351bp) protein (117aa)
aminoacrylate peracid reductase n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000379169E
Endoribonuclease L-PSP {ECO:0000313|EMBL:ELX09183.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacte
endoribonuclease L-PSP
scnpilot_expt_750_bf_scaffold_252_25
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26754..27794)
DNA (1041bp) protein (347aa)
ABC-type Fe3+ transport system, periplasmic component n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T092_JANMA
futA; Fe3+ ABC transporter periplasmic protein; K02012 iron(III) transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
futA; Fe3+ ABC transporter periplasmic protein
scnpilot_expt_750_bf_scaffold_252_26
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27922..28299
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000378F0FE
Uncharacterized protein {ECO:0000313|EMBL:EGK72845.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatili
hypothetical protein
scnpilot_expt_750_bf_scaffold_252_27
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28293..28889)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9BQQ4_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ02096.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
cell wall invasion-associated hydrolase
scnpilot_expt_750_bf_scaffold_252_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29125..31062
DNA (1938bp) protein (646aa)
prpE; propionyl-CoA synthetase; K01908 propionyl-CoA synthetase [EC:6.2.1.17] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
prpE; propionate--CoA ligase PrpE (EC:6.2.1.17)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036F21F8 rbh
scnpilot_expt_750_bf_scaffold_252_29
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31063..31863
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B339_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ17208.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
Displaying items 1-30 of 133 in total

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