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scnpilot_expt_750_bf_scaffold_278

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_278_1
unknown

Not on your lists

1..81
DNA (81bp) protein (27aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_278_2
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1493..1846
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349E856
methyl-accepting chemotaxis protein Tax=RBG_16_Gammaproteobacteria_51_14_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_278_3

Not on your lists

2549..2785
DNA (237bp) protein (79aa)
Protein containing DUF497 n=1 Tax=mine drainage metagenome RepID=T1D386_9ZZZZ
Protein containing DUF497 {ECO:0000313|EMBL:EQD75914.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein of unknown function DUF497
scnpilot_expt_750_bf_scaffold_278_4
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2769..3023
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=mine drainage metagenome RepID=T1A8R8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KFB67420.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_278_5
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3119..3472
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349E856
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EGW23498.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" s
hypothetical protein
scnpilot_expt_750_bf_scaffold_278_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3607..4188
DNA (582bp) protein (194aa)
hypothetical protein id=12493358 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_278_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4116..9341)
DNA (5226bp) protein (1742aa)
RecQ familyATP-dependent DNA helicase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUK2_9BURK rbh
RecQ familyATP-dependent DNA helicase {ECO:0000313|EMBL:AFU46623.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
RecQ familyATP-dependent DNA helicase rbh
scnpilot_expt_750_bf_scaffold_278_8
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

9670..10092
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 RepID=UPI00036FE911
hypothetical protein Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PilT protein domain-containing protein
scnpilot_expt_750_bf_scaffold_278_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..11330)
DNA (1167bp) protein (389aa)
Putative ABC transporter, branched-chain amino acid-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XI30_VARPD
putative ABC transporter, branched-chain amino acid-binding protein
Putative ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU52171.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
scnpilot_expt_750_bf_scaffold_278_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11355..13214)
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CP76_VARPS
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACS21540.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
scnpilot_expt_750_bf_scaffold_278_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13236..14009)
DNA (774bp) protein (258aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J3CVC9_9BURK
putative branched-chain amino acid ABC transporter, ATP-binding protein
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL78976.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
scnpilot_expt_750_bf_scaffold_278_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14006..14803)
DNA (798bp) protein (266aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1E7T5_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJE48389.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_278_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14808..15884)
DNA (1077bp) protein (359aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000368FDD2
putative branched-chain amino acid ABC transporter, permease protein
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU52175.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
scnpilot_expt_750_bf_scaffold_278_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15900..16775)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YBS7_9BURK
inner-membrane translocator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_278_15
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17031..17837)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HB10_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERS06326.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp.
TetR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_278_16
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17972..19345)
DNA (1374bp) protein (458aa)
Putative transcriptional regulator n=1 Tax=Burkholderia sp. YI23 RepID=G8MIG8_9BURK rbh
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AET93376.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho
scnpilot_expt_750_bf_scaffold_278_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19401..20810
DNA (1410bp) protein (470aa)
Putative sulfatase n=1 Tax=Variovorax paradoxus B4 RepID=T1XMC6_VARPD rbh
putative sulfatase
Putative sulfatase {ECO:0000313|EMBL:AGU53753.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_expt_750_bf_scaffold_278_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20817..21359
DNA (543bp) protein (181aa)
Transcriptional regulator, MarR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XN94_VARPD
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGU53764.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
scnpilot_expt_750_bf_scaffold_278_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21356..22411
DNA (1056bp) protein (352aa)
Putative Bug-like extra-cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XLL2_VARPD
putative Bug-like extra-cytoplasmic solute receptor, TTT family
Putative Bug-like extra-cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU53767.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
scnpilot_expt_750_bf_scaffold_278_20
Medicago truncatula, Medicago, Fabales, rosids, Streptophyta, Viridiplantae

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comp(22511..23653)
DNA (1143bp) protein (381aa)
Acyl coenzyme A dehydrogenase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RI62_9RHOB rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEH15547.1}; Uncharacterized protein {ECO:0000313|EnsemblPlants:KEH15547}; TaxID=3880 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyt
acyl-CoA dehydrogenase
scnpilot_expt_750_bf_scaffold_278_21
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(23672..25225)
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034D4C5B rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EMA38051.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hameli
hypothetical protein
scnpilot_expt_750_bf_scaffold_278_22
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25255..26436)
DNA (1182bp) protein (394aa)
Acetyl-CoA C-acyltransferase family protein {ECO:0000313|EMBL:KGS06932.1}; EC=2.3.1.16 {ECO:0000313|EMBL:KGS06932.1};; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
Thiolase family protein n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2SWN4_BURTA
acetyl-CoA C-acetyltransferase family protein
scnpilot_expt_750_bf_scaffold_278_23
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26433..28538)
DNA (2106bp) protein (702aa)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Burkholderia thailandensis RepID=UPI00016AD980
enoyl-CoA hydratase/isomerase family protein
scnpilot_expt_750_bf_scaffold_278_24
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28726..29910)
DNA (1185bp) protein (395aa)
FIG005478: Porin, Gram-negative type n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XQL0_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:KGD95216.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp.
Porin, Gram-negative type
scnpilot_expt_750_bf_scaffold_278_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30077..31006)
DNA (930bp) protein (310aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XMJ1_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU53766.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
scnpilot_expt_750_bf_scaffold_278_26
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31225..31878
DNA (654bp) protein (218aa)
Nitroreductase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M5A045_9BRAD rbh
nitroreductase
Nitroreductase {ECO:0000313|EMBL:BAO27903.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans s
scnpilot_expt_750_bf_scaffold_278_27
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31860..32273)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036B4478
PilT protein domain-containing protein; K07062 Tax=CG_Hydro_01
PilT protein domain-containing protein
scnpilot_expt_750_bf_scaffold_278_28
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32260..32619)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036931F5
prevent-host-death family protein Tax=CG_Hydro_01
prevent-host-death family protein
scnpilot_expt_750_bf_scaffold_278_29
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32821..33732
DNA (912bp) protein (304aa)
Malonate transporter n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T3D5_JANMA rbh
malonate transporter
Malonate transporter {ECO:0000313|EMBL:ABR90231.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacteriu
scnpilot_expt_750_bf_scaffold_278_30
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33751..35094
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHY2_METPP rbh
hypothetical protein
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:EWS61486.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp
Displaying items 1-30 of 91 in total

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