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scnpilot_expt_750_bf_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_304_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..317
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9GFG2_PSEAI
phage-related integrase
Phage-related integrase {ECO:0000313|EMBL:GAO23778.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp
scnpilot_expt_750_bf_scaffold_304_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

760..1161
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000363A5CF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25568.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
scnpilot_expt_750_bf_scaffold_304_3
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2362..3072
DNA (711bp) protein (237aa)
hypothetical protein Tax=CG_Rhodocyc_01
Putative uncharacterized protein id=1351593 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
scnpilot_expt_750_bf_scaffold_304_4
unknown

Not on your lists

3069..3212
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_5
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3223..4533
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVU8_POLNA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39776.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthale
scnpilot_expt_750_bf_scaffold_304_6
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5515..5991
DNA (477bp) protein (159aa)
Putative metal-binding protein n=1 Tax=Polaromonas sp. CF318 RepID=J2UIR3_9BURK
Putative metal-binding protein {ECO:0000313|EMBL:EJL91337.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" so
hypothetical protein
scnpilot_expt_750_bf_scaffold_304_7
unknown

Not on your lists

6112..6264
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_8
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6227..8536)
DNA (2310bp) protein (770aa)
phaC; poly(3-hydroxyalkanoate) synthetase protein (EC:2.3.1.-)
Poly(3-hydroxyalkanoate) synthetase protein {ECO:0000313|EMBL:CDG81342.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDG81342.1};; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
hypothetical protein, partial n=1 Tax=Cupriavidus sp. WS RepID=UPI00037C9884 rbh
scnpilot_expt_750_bf_scaffold_304_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8607..8852)
DNA (246bp) protein (82aa)
copper-transporting ATPase (EC:3.6.3.4)
Copper-transporting ATPase {ECO:0000313|EMBL:BAH38368.1}; EC=3.6.3.4 {ECO:0000313|EMBL:BAH38368.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
Copper-transporting ATPase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A808_GEMAT
scnpilot_expt_750_bf_scaffold_304_10
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9019..10206)
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C682 rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EXS68733.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase
scnpilot_expt_750_bf_scaffold_304_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10484..10753
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPZ8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS70094.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrop
scnpilot_expt_750_bf_scaffold_304_12
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10774..11433
DNA (660bp) protein (220aa)
Protein-S-isoprenylcysteine methyltransferase n=5 Tax=Ralstonia RepID=C6BR38_RALP1 rbh
protein-S-isoprenylcysteine methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:ENZ75359.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii
scnpilot_expt_750_bf_scaffold_304_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..13966
DNA (2517bp) protein (839aa)
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W625_ACISJ
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase {ECO:0000313|EMBL:ABM41700.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidov
scnpilot_expt_750_bf_scaffold_304_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14051..14605
DNA (555bp) protein (185aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] Tax=CG_Rhodocyc_01
ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC:1.10.2.2)
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3G5_NITHN
scnpilot_expt_750_bf_scaffold_304_15
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14613..15974
DNA (1362bp) protein (454aa)
Beta-lactamase domain protein n=6 Tax=Ralstonia RepID=B2UE72_RALPJ rbh
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
beta-lactamase domain protein
scnpilot_expt_750_bf_scaffold_304_16
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15971..17512
DNA (1542bp) protein (514aa)
thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=GWA2_Curvibacter_64_110_curated
Putative thymidine phosphorylase n=6 Tax=Ralstonia RepID=B2UE73_RALPJ rbh
thymidine phosphorylase
scnpilot_expt_750_bf_scaffold_304_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17509..18420
DNA (912bp) protein (304aa)
Putative ribose-phosphate pyrophosphokinase n=1 Tax=Variovorax paradoxus B4 RepID=T1XLP5_VARPD rbh
putative ribose-phosphate pyrophosphokinase
Putative ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:AGU53045.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
scnpilot_expt_750_bf_scaffold_304_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18417..18677
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLP0_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM36568.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Po
scnpilot_expt_750_bf_scaffold_304_19
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18705..20342
DNA (1638bp) protein (546aa)
2-octaprenylphenol hydroxylase (EC:1.14.13.-); K03688 ubiquinone biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
ABC-1 domain protein n=6 Tax=Ralstonia RepID=B2UE57_RALPJ rbh
ABC1 family protein
scnpilot_expt_750_bf_scaffold_304_20
unknown

Not on your lists

comp(20371..20706)
DNA (336bp) protein (112aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_21
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20894..22801
DNA (1908bp) protein (636aa)
cell division protein FtsH n=1 Tax=Fluoribacter dumoffii RepID=UPI00026C7FA6 rbh
ftsH; ATP-dependent metallopeptidase M41, FtsH Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
ftsH; ATP-dependent metallopeptidase M41, FtsH
scnpilot_expt_750_bf_scaffold_304_22
unknown

Not on your lists

22915..23274
DNA (360bp) protein (120aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23444..23860)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E33D6D
OsmC family protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
OsmC family protein
scnpilot_expt_750_bf_scaffold_304_24
unknown

Not on your lists

24494..24796
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_25
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24658..25698)
DNA (1041bp) protein (347aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:ABM42332.1}; EC=1.2.1.12 {ECO:0000313|EMBL:ABM42332.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7V7_ACISJ rbh
scnpilot_expt_750_bf_scaffold_304_26
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25756..26271)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037D56DE
cyclopropane-fatty-acyl-phospholipid synthase
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AJP48320.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclacea
scnpilot_expt_750_bf_scaffold_304_27
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26399..26650)
DNA (252bp) protein (84aa)
threonine dehydrogenase and related Zn-dependent dehydrogenase
Threonine dehydrogenase and related Zn-dependent dehydrogenase {ECO:0000313|EMBL:BAO84374.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" so
alcohol dehydrogenase id=5082226 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
scnpilot_expt_750_bf_scaffold_304_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26632..27498)
DNA (867bp) protein (289aa)
Alcohol dehydrogenase (NADP(+)) {ECO:0000313|EMBL:AEB86087.1}; EC=1.1.1.2 {ECO:0000313|EMBL:AEB86087.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
Alcohol dehydrogenase (NADP(+)) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEY3_ALIDK
alcohol dehydrogenase
scnpilot_expt_750_bf_scaffold_304_29
unknown

Not on your lists

27774..28130
DNA (357bp) protein (119aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_304_30
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28438..29523)
DNA (1086bp) protein (362aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVV2_POLNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN52276.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae
phospholipase D/transphosphatidylase
Displaying items 1-30 of 154 in total

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