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scnpilot_expt_750_bf_scaffold_313

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Displaying items 1-30 of 80 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_313_1
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..599)
DNA (597bp) protein (199aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=GWA2_Curvibacter_64_110_curated
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2J6_LEPCP
scnpilot_expt_750_bf_scaffold_313_2
bacterium YEK0313, Bacteria

Not on your lists

695..1297
DNA (603bp) protein (201aa)
NAD(P)H quinone oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E9CEA2 rbh
p-benzoquinone reductase {ECO:0000313|EMBL:CEJ13655.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TrpR binding protein WrbA
scnpilot_expt_750_bf_scaffold_313_3
Thauera aromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1315..1743)
DNA (429bp) protein (143aa)
Thioredoxin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA5_9PROT
Thioredoxin-like protein {ECO:0000313|EMBL:AIO06098.1}; TaxID=59405 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aromatica.;"
thioredoxin
scnpilot_expt_750_bf_scaffold_313_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1836..2765)
DNA (930bp) protein (310aa)
Putative gluconolaconase n=1 Tax=Variovorax paradoxus B4 RepID=T1XDH7_VARPD
putative gluconolaconase
Putative gluconolaconase {ECO:0000313|EMBL:AGU51002.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_expt_750_bf_scaffold_313_5
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2752..3888)
DNA (1137bp) protein (379aa)
Transcriptional regulator, LacI family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRE7_VEREI rbh
regulatory protein LacI
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABM60204.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephr
scnpilot_expt_750_bf_scaffold_313_6
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4054..5100
DNA (1047bp) protein (349aa)
Taurine ABC transporter periplasmic binding protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X5F8_9BURK
aliphatic sulfonate ABC transporter substrate-binding protein
Taurine ABC transporter periplasmic binding protein {ECO:0000313|EMBL:EON14714.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;"
scnpilot_expt_750_bf_scaffold_313_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5102..5899
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00035CC7B6
transport system permease
Putative transport system permease protein {ECO:0000313|EMBL:CCN24864.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bo
scnpilot_expt_750_bf_scaffold_313_8
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5896..6669
DNA (774bp) protein (258aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000368DA01
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EJZ29593.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Brady
ABC transporter ATP-binding protein
scnpilot_expt_750_bf_scaffold_313_9
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6818..8521
DNA (1704bp) protein (568aa)
Thiamine pyrophosphate enzyme domain protein TPP-binding n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF2_VEREI rbh
thiamine pyrophosphate-binding domain-containing protein
Thiamine pyrophosphate enzyme domain protein TPP-binding {ECO:0000313|EMBL:ABM60209.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephro
scnpilot_expt_750_bf_scaffold_313_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8565..9290
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF3_VEREI rbh
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_bf_scaffold_313_11
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9313..10281
DNA (969bp) protein (323aa)
Uncharacterized protein UPF0065 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF4_VEREI rbh
hypothetical protein rbh
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM60211.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter
scnpilot_expt_750_bf_scaffold_313_12
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10278..11138
DNA (861bp) protein (287aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF5_VEREI rbh
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM60212.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source=
scnpilot_expt_750_bf_scaffold_313_13
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11113..11799)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RCA1_9RHOO
LuxR family transcriptional regulator Tax=CG_Rhodocyc_01
LuxR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_313_14
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11991..12989
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSJ1_RUBGI
dusA; tRNA-dihydrouridine synthase
tRNA-dihydrouridine synthase {ECO:0000313|EMBL:BAO83572.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.
scnpilot_expt_750_bf_scaffold_313_15
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12844..13287)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RVQ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95390.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis A
hypothetical protein
scnpilot_expt_750_bf_scaffold_313_16
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13388..14659
DNA (1272bp) protein (424aa)
UPF0761 membrane protein KYC_18100 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FAB8_9BURK
UPF0761 membrane protein JL37_01615 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Ac
ribonuclease BN-like family protein 1
scnpilot_expt_750_bf_scaffold_313_17
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14625..14942)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003747261
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJZ58855.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungo
scnpilot_expt_750_bf_scaffold_313_18
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15008..15853)
DNA (846bp) protein (282aa)
Alpha/beta hydrolase fold protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VUZ1_9BURK rbh
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
alpha/beta fold family hydrolase
scnpilot_expt_750_bf_scaffold_313_19
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15880..17184)
DNA (1305bp) protein (435aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.47)
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ADN58349.1}; EC=2.5.1.47 {ECO:0000313|EMBL:ADN58349.1};; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000376E712 rbh
scnpilot_expt_750_bf_scaffold_313_20
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17375..18769
DNA (1395bp) protein (465aa)
Response regulator receiver protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW8_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EGV33874.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhod
histidine kinase
scnpilot_expt_750_bf_scaffold_313_21
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18785..19174
DNA (390bp) protein (130aa)
Response regulator receiver protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW7_9GAMM
Response regulator receiver domain protein {ECO:0000313|EMBL:EXJ14498.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="
chemotaxis protein CheY
scnpilot_expt_750_bf_scaffold_313_22
unknown

Not on your lists

19171..19704
DNA (534bp) protein (178aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_313_23
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19709..21121
DNA (1413bp) protein (471aa)
Methyl-accepting chemotaxis sensory transducer with Cache sensor n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW5_9GAMM rbh
Putative methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EXJ14501.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcu
methyl-accepting chemotaxis sensory transducer
scnpilot_expt_750_bf_scaffold_313_24
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21126..24902
DNA (3777bp) protein (1259aa)
Response regulator receiver n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21NE6_SACD2 rbh
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ABD79783.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharopha
scnpilot_expt_750_bf_scaffold_313_25
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24960..25424
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNV5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDM83941.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED
CBS domain-containing protein
scnpilot_expt_750_bf_scaffold_313_26
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25460..26203
DNA (744bp) protein (248aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1000565 spe
surE; stationary phase survival protein SurE (EC:3.6.1.11)
stationary phase survival protein SurE n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI000362FFBE
scnpilot_expt_750_bf_scaffold_313_27
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26200..26940
DNA (741bp) protein (247aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
Protein-L-isoaspartate O-methyltransferase n=2 Tax=Pandoraea RepID=V5UIB6_9BURK
protein-L-isoaspartate O-methyltransferase
scnpilot_expt_750_bf_scaffold_313_28
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27007..27897
DNA (891bp) protein (297aa)
Peptidase M23 n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSH6_ACCPU
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ACV34689.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_expt_750_bf_scaffold_313_29
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27946..28731
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2SWF1_BURTA rbh
putative 3'-5' exonuclease related to the exonuclease domain of PolB family protein
3'-5' exonuclease {ECO:0000313|EMBL:AIP62666.1}; TaxID=57975 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkh
scnpilot_expt_750_bf_scaffold_313_30
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28728..30263
DNA (1536bp) protein (512aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Burkholderia sp. SJ98 RepID=K8RCK5_9BURK
Displaying items 1-30 of 80 in total

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