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scnpilot_expt_750_bf_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_487_1

Not on your lists

comp(1..792)
DNA (792bp) protein (264aa)
Replication initiation factor n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UBK9_RALPJ
Marine sediment metagenome DNA, contig: S06H3_C00031 {ECO:0000313|EMBL:GAH92008.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
replication initiation factor
scnpilot_expt_750_bf_scaffold_487_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(789..1475)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RYW5_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48731.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
scnpilot_expt_750_bf_scaffold_487_3
unknown

Not on your lists

1576..1863
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_487_trna_3
unknown

Not on your lists

comp(1821..1908)
DNA (88bp)
transferRNA
scnpilot_expt_750_bf_scaffold_487_4
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1997..3298)
DNA (1302bp) protein (434aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthetase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003682F13 rbh
scnpilot_expt_750_bf_scaffold_487_5
Oligella urethralis, Oligella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3430..5007)
DNA (1578bp) protein (526aa)
ATPase AAA n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003664C56
FIG065221: Holliday junction DNA helicase
Recombination factor protein RarA {ECO:0000313|EMBL:KGF31001.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella uret
scnpilot_expt_750_bf_scaffold_487_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4985..6247)
DNA (1263bp) protein (421aa)
MFS transporter n=1 Tax=Curvibacter lanceolatus RepID=UPI00036ED0A0
major facilitator superfamily transporter Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
major facilitator superfamily protein
scnpilot_expt_750_bf_scaffold_487_7
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6390..7523)
DNA (1134bp) protein (378aa)
Low-specificity D-threonine aldolase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6STY6_JANMA rbh
low-specificity D-threonine aldolase
Low-specificity D-threonine aldolase {ECO:0000313|EMBL:ABR89770.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="
scnpilot_expt_750_bf_scaffold_487_8
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7507..8145)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000372E588
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
lolA; Outer membrane lipoprotein carrier protein LolA
scnpilot_expt_750_bf_scaffold_487_9
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8145..10520)
DNA (2376bp) protein (792aa)
cell division protein FtsK n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E78DAF
Cell division protein FtsK {ECO:0000313|EMBL:KIF82406.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillu
ftsK; DNA translocase
scnpilot_expt_750_bf_scaffold_487_10
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10540..11214)
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW32_9BURK rbh
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EFV95515.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Laut
Crp/Fnr family transcriptional regulator
scnpilot_expt_750_bf_scaffold_487_11
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11373..12332
DNA (960bp) protein (320aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiacea
Thioredoxin reductase n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TBH3_BURSG rbh
thioredoxin reductase
scnpilot_expt_750_bf_scaffold_487_12
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12350..13021
DNA (672bp) protein (224aa)
Smr protein/MutS2 n=1 Tax=Ralstonia sp. PBA RepID=I9W300_9RALS
hypothetical protein
Smr protein/MutS2 {ECO:0000313|EMBL:EIZ02807.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
scnpilot_expt_750_bf_scaffold_487_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13025..13681)
DNA (657bp) protein (219aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SLF6_RHOMR
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_487_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13726..14382
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6X0F6_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_487_15
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14415..14600)
DNA (186bp) protein (62aa)
Nitrogen regulatory protein P-II n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ06_ACCPU
nitrogen regulatory protein P-II
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
scnpilot_expt_750_bf_scaffold_487_16
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14787..16400)
DNA (1614bp) protein (538aa)
nadE1; NAD synthetase (EC:6.3.5.1)
NAD+ synthase (Glutamine-hydrolysing) {ECO:0000313|EMBL:ABR88483.1}; EC=6.3.5.1 {ECO:0000313|EMBL:ABR88483.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxa
NAD synthetase n=1 Tax=Herbaspirillum lusitanum RepID=UPI000305C40E rbh
scnpilot_expt_750_bf_scaffold_487_17
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16415..17644
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R326_CUPTR rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ68707.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwane
scnpilot_expt_750_bf_scaffold_487_18
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17539..18999)
DNA (1461bp) protein (487aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XEG5_METSD
NodT family RND efflux system outer membrane lipoprotein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
NodT family RND efflux system outer membrane lipoprotein
scnpilot_expt_750_bf_scaffold_487_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18996..22121)
DNA (3126bp) protein (1042aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WR45_9BURK rbh
hydrophobe/amphiphile efflux-1 (HAE1) family transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
scnpilot_expt_750_bf_scaffold_487_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22138..23430)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003659E5D rbh
RND family efflux transporter, MFP subunit; K03585 membrane fusion protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_487_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23455..24078
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB71_NITMU
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABB74000.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
scnpilot_expt_750_bf_scaffold_487_22
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24132..24680)
DNA (549bp) protein (183aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1469502 species="Ba
Inorganic pyrophosphatase n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SWN9_POLSQ
inorganic pyrophosphatase
scnpilot_expt_750_bf_scaffold_487_23
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24832..25998)
DNA (1167bp) protein (389aa)
Porphyrin biosynthesis protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VWN5_9BURK
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KFI06479.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consoc
hypothetical protein
scnpilot_expt_750_bf_scaffold_487_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25995..27191)
DNA (1197bp) protein (399aa)
putative enzyme of heme biosynthesis; K02496 uroporphyrin-III C-methyltransferase [EC:2.1.1.107] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Probable bifunctional: uroporphyrin-III c-methyltransferase and uroporphyrinogen-III synthase transmembrane protein (EC:2.1.1.107 4.2.1.75)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DP14_9BURK
scnpilot_expt_750_bf_scaffold_487_25
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27191..27970)
DNA (780bp) protein (260aa)
Probable bifunctional: uroporphyrin-III c-methyltransferase and uroporphyrinogen-III synthase transmembrane protein (EC:2.1.1.107 4.2.1.75)
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:EON14129.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EON14129.1};; TaxID=1286093 species="Bacteria; Proteobact
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X3S2_9BURK
scnpilot_expt_750_bf_scaffold_487_26
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27952..28914)
DNA (963bp) protein (321aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
porphobilinogen deaminase (EC:2.5.1.61)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037F967F
scnpilot_expt_750_bf_scaffold_487_27
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28983..29783)
DNA (801bp) protein (267aa)
Response regulator receiver domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW44_9BURK rbh
Response regulator receiver domain protein {ECO:0000313|EMBL:EFV95527.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="La
algR; alginate biosynthesis regulatory protein AlgR
scnpilot_expt_750_bf_scaffold_487_28
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29752..30909)
DNA (1158bp) protein (386aa)
Histidine kinase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW45_9BURK rbh
Histidine kinase {ECO:0000313|EMBL:EFV95528.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 515
two-component system sensor ATPase
scnpilot_expt_750_bf_scaffold_487_29
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31013..32416
DNA (1404bp) protein (468aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW46_9BURK rbh
Displaying items 1-30 of 81 in total

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