ggKbase home page

scnpilot_expt_750_bf_scaffold_720

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_720_1
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1066)
DNA (1065bp) protein (355aa)
cation diffusion facilitator family transporter id=12495454 bin=THIO_HI species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ENO97988.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Th
cation diffusion facilitator family transporter
scnpilot_expt_750_bf_scaffold_720_2
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1075..1413)
DNA (339bp) protein (113aa)
hypothetical protein id=12495453 bin=THIO_HI species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO97989.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.
hypothetical protein
scnpilot_expt_750_bf_scaffold_720_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..2071)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHJ5_9GAMM
hypothetical protein Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_720_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2984..3874
DNA (891bp) protein (297aa)
PaaX domain protein, C-domain n=2 Tax=Pseudomonas aeruginosa RepID=A6UZR6_PSEA7 rbh
PaaX domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:KFF36348.1}; TaxID=1262663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aerug
scnpilot_expt_750_bf_scaffold_720_5
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3871..5553
DNA (1683bp) protein (561aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221M8_RHOFD rbh
acyl-CoA dehydrogenase-like protein; K09456 putative acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
acyl-CoA dehydrogenase-like protein
scnpilot_expt_750_bf_scaffold_720_6
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5626..8223)
DNA (2598bp) protein (866aa)
Cyanophycin synthase (EC:6.3.2.29 6.3.2.30)
Cyanophycin synthetase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HIH4_9BURK
Cyanophycin synthetase {ECO:0000313|EMBL:ESJ02415.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC
scnpilot_expt_750_bf_scaffold_720_7
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8302..10521)
DNA (2220bp) protein (740aa)
cyanophycin synthetase (EC:6.3.2.-)
Cyanophycin synthetase {ECO:0000313|EMBL:CAQ68734.1}; EC=6.3.2.- {ECO:0000313|EMBL:CAQ68734.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae;
Cyanophycin synthetase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R354_CUPTR
scnpilot_expt_750_bf_scaffold_720_8
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10656..13055
DNA (2400bp) protein (800aa)
ABC transporter n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2H9S8_9BURK
ABC transporter {ECO:0000313|EMBL:ESJ02417.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
ABC transporter transmembrane region:ABC transporter related
scnpilot_expt_750_bf_scaffold_720_9
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13052..13537
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L345_BORA1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ48843.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (stra
scnpilot_expt_750_bf_scaffold_720_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13586..14242)
DNA (657bp) protein (219aa)
gph2; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkho
Phosphoglycolate phosphatase Gph n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EY76_CUPNN
scnpilot_expt_750_bf_scaffold_720_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14247..14972)
DNA (726bp) protein (242aa)
bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase (EC:2.1.1.64) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] id=5080087 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
scnpilot_expt_750_bf_scaffold_720_12
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(15089..15760)
DNA (672bp) protein (224aa)
Outer membrane protein A n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1H0_JANMA
ompA2; outer membrane protein OmpA; K03286 OmpA-OmpF porin, OOP family Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
ompA; outer membrane protein A
scnpilot_expt_750_bf_scaffold_720_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15824..17335)
DNA (1512bp) protein (504aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHV6_AZOSU
N-ethylammeline chlorohydrolase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
5-methylthioadenosine/S-adenosylhomocysteine deaminase
scnpilot_expt_750_bf_scaffold_720_14
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17416..20004
DNA (2589bp) protein (863aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000256|SAAS:SAAS00075954};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteri
DNA gyrase subunit A n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI000302FF19
scnpilot_expt_750_bf_scaffold_720_15
unknown

Not on your lists

comp(20143..20754)
DNA (612bp) protein (204aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_720_16
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20974..22086
DNA (1113bp) protein (371aa)
pheA; prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase {ECO:0000313|EMBL:AEK63578.1}; EC=4.2.1.51 {ECO:0000313|EMBL:AEK63578.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae
Prephenate dehydratase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ADN6_COLFT rbh
scnpilot_expt_750_bf_scaffold_720_17
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22236..23351
DNA (1116bp) protein (372aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
Biosynthetic Aromatic amino acid aminotransferase beta (EC:2.6.1.57)
Histidinol-phosphate aminotransferase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GCZ5_9BURK rbh
scnpilot_expt_750_bf_scaffold_720_18
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23362..24222
DNA (861bp) protein (287aa)
Prephenate dehydrogenase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X6B2_9BURK
Prephenate dehydrogenase {ECO:0000313|EMBL:KHQ94992.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;
prephenate dehydrogenase
scnpilot_expt_750_bf_scaffold_720_19
unknown

Not on your lists

comp(24239..24313)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 19 items

View Taxonomy