ggKbase home page

scnpilot_expt_750_bf_scaffold_404

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_404_1
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

220..834
DNA (615bp) protein (205aa)
Resolvase, N-terminal domain protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JV07_BURVG rbh
resolvase domain-containing protein
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:ABO60110.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia ce
scnpilot_expt_750_bf_scaffold_404_2
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(901..1332)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2FXP7_BURVI
Uncharacterized protein {ECO:0000313|EMBL:ERJ35465.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia comple
hypothetical protein
scnpilot_expt_750_bf_scaffold_404_3
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1361..2713)
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JV02_BURVG rbh
integral membrane sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_404_4
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2689..3354)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JV01_BURVG rbh
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABO60104.1}; Flags: Precursor;; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burk
scnpilot_expt_750_bf_scaffold_404_5

Not on your lists

comp(3377..4135)
DNA (759bp) protein (253aa)
Uncharacterized protein n=4 Tax=Bacteria RepID=C5T7P7_ACIDE rbh
mmfC2; major facilitator superfamily permease
Uncharacterized protein {ECO:0000313|EMBL:AEV56853.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_expt_750_bf_scaffold_404_6
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4152..4604)
DNA (453bp) protein (151aa)
Conserved hypothetical signal peptide protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JUZ9_BURVG
putative signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:ABO60102.1}; Flags: Precursor;; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; B
scnpilot_expt_750_bf_scaffold_404_7
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4634..5416)
DNA (783bp) protein (261aa)
Uncharacterized protein n=7 Tax=Bacteria RepID=A4JUZ8_BURVG rbh
mmfC1; permease MFS
Integral membrane protein (Rhomboid family) {ECO:0000313|EMBL:ERJ35469.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkhol
scnpilot_expt_750_bf_scaffold_404_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5486..6082)
DNA (597bp) protein (199aa)
mmfB; UDP pyrophosphate phosphatase (EC:3.6.1.27)
Phosphoesterase PA-phosphatase related n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7P4_ACIDE rbh
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:EER59504.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
scnpilot_expt_750_bf_scaffold_404_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6139..6474)
DNA (336bp) protein (112aa)
Propeptide, PepSY amd peptidase M4 n=5 Tax=Bacteria RepID=A4JUZ6_BURVG
propeptide, PepSY amd peptidase M4
Propeptide, PepSY amd peptidase M4 {ECO:0000313|EMBL:EER59503.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
scnpilot_expt_750_bf_scaffold_404_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6717..7274
DNA (558bp) protein (186aa)
DNA-invertase n=41 Tax=Proteobacteria RepID=C4NV12_ECOLX rbh
transposon Tn21 resolvase
Resolvase {ECO:0000313|EMBL:AGE11243.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="C
scnpilot_expt_750_bf_scaffold_404_11
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7277..10249
DNA (2973bp) protein (991aa)
Tn1696 transposase TnpA n=43 Tax=Proteobacteria RepID=C4NV11_ECOLX rbh
transposase
Transposase {ECO:0000313|EMBL:AJE44700.1}; Transposase Tn3 family protein {ECO:0000313|EMBL:BAP75821.1}; TaxID=571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobact
scnpilot_expt_750_bf_scaffold_404_12
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10282..11310)
DNA (1029bp) protein (343aa)
Plasmid replication region DNA-binding protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IBC5_9BURK
Plasmid replication region DNA-binding protein {ECO:0000313|EMBL:EIF28027.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" sou
cointegrase resolution protein
scnpilot_expt_750_bf_scaffold_404_13
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11496..12632
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FD6C4 rbh
Integrase {ECO:0000313|EMBL:KHD33340.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
Phage integrase
scnpilot_expt_750_bf_scaffold_404_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12589..13341
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037FA685
Transcriptional activator protein czcR {ECO:0000313|EMBL:CDQ12289.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.
two component heavy metal response winged helix family transcriptional regulator
scnpilot_expt_750_bf_scaffold_404_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13346..14740
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacil
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F7CA9
heavy metal sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_404_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14898..16307
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036F296B
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG89161.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source
scnpilot_expt_750_bf_scaffold_404_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16304..17344
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036D4873
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89162.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
scnpilot_expt_750_bf_scaffold_404_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17341..20457
DNA (3117bp) protein (1039aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003814170
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; R
scnpilot_expt_750_bf_scaffold_404_19
Acinetobacter venetianus, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20553..23507
DNA (2955bp) protein (985aa)
Uncharacterized protein n=1 Tax=Acinetobacter venetianus RAG-1 = CIP 110063 RepID=N8YK01_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ENV37117.1}; TaxID=1191460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp.
transposase, TnpA family
scnpilot_expt_750_bf_scaffold_404_20
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23736..24188
DNA (453bp) protein (151aa)
Putative signal transduction protein with CBS domains n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM35_ACCPU
Putative signal-transduction protein {ECO:0000313|EMBL:KFB71895.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter
putative signal transduction protein with CBS domains
scnpilot_expt_750_bf_scaffold_404_21
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24209..25084)
DNA (876bp) protein (292aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
UspA domain-containing protein id=12497790 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
uspA; universal stress protein
scnpilot_expt_750_bf_scaffold_404_22
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25108..25986)
DNA (879bp) protein (293aa)
Protease HtpX homolog n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACX1_9PROT
HtpX domain-containing protein Tax=CG_Beta_01
HtpX domain-containing protein
scnpilot_expt_750_bf_scaffold_404_23
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26021..26704)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNZ4_ACCPU
Modulator of FtsH protease YccA {ECO:0000313|EMBL:EXI87126.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. B
hypothetical protein
scnpilot_expt_750_bf_scaffold_404_24
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26734..27105)
DNA (372bp) protein (124aa)
Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RTG4_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:EXI66269.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
putative sigma 54 modulation protein/30S ribosomal protein S30EA
scnpilot_expt_750_bf_scaffold_404_25
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27217..28116
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI00037D85C3 rbh
LysR family transcriptional regulator
Tax=BJP_IG2103_Dechloromonas_60_92
scnpilot_expt_750_bf_scaffold_404_26
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28297..30969)
DNA (2673bp) protein (891aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=CG_Rhodocyc_01
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NZ01_CHRVO rbh
scnpilot_expt_750_bf_scaffold_404_27
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31114..31704)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TQ2_RHOFD
hypothetical protein; K06966 Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_404_28
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32014..32745)
DNA (732bp) protein (244aa)
Transcriptional regulator, XRE family n=3 Tax=Azotobacter vinelandii RepID=C1DGZ3_AZOVD rbh
transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AGK19104.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azo
scnpilot_expt_750_bf_scaffold_404_29
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32866..33681
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQW0_ACCPU
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_404_30
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34036..34650)
DNA (615bp) protein (205aa)
DNA polymerase III, epsilon subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47GA1_DECAR rbh
DNA polymerase III subunit epsilon
Tax=BJP_IG2103_Dechloromonas_63_51
Displaying items 1-30 of 70 in total

View Taxonomy