ggKbase home page

scnpilot_expt_750_bf_scaffold_101

Search features with annotation key words

Displaying items 1-30 of 194 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_101_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93..1640)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A328B5 rbh
Putative exported protein {ECO:0000313|EMBL:CEM57360.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campest
hypothetical protein
scnpilot_expt_750_bf_scaffold_101_2
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1687..3849)
DNA (2163bp) protein (721aa)
RelA/SpoT family protein (EC:2.7.6.5)
RelA/SpoT family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6G2_9GAMM rbh
RelA/SpoT family protein {ECO:0000313|EMBL:EED38864.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophom
scnpilot_expt_750_bf_scaffold_101_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3913..4425
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Xanthomonadaceae RepID=UPI00029B47A1
Putative secreted protein {ECO:0000313|EMBL:EZP47599.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotroph
hypothetical protein
scnpilot_expt_750_bf_scaffold_101_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4439..5050
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3G2I0_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EJP76808.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas malto
hypothetical protein
scnpilot_expt_750_bf_scaffold_101_5
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5093..9256)
DNA (4164bp) protein (1388aa)
ATP dependent RNA helicase n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UXI9_XANC8 rbh
Strain LMCP11 contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29838.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;"
ATP dependent RNA helicase
scnpilot_expt_750_bf_scaffold_101_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9345..9893
DNA (549bp) protein (183aa)
Ferritin Dps family protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4ST10_STRM5 rbh
ferritin Dps family protein
Ferritin Dps family protein {ECO:0000313|EMBL:ACF52801.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas ma
scnpilot_expt_750_bf_scaffold_101_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10343..12148
DNA (1806bp) protein (602aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TIQ5_STEMA rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EMI49052.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomon
ATP-dependent DNA helicase RecQ
scnpilot_expt_750_bf_scaffold_101_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12156..14915)
DNA (2760bp) protein (920aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC87484.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
Serine/threonine protein kinase id=2862879 bin=GWF1_Xanthomonadales_69_6 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
serine/threonine protein kinase
scnpilot_expt_750_bf_scaffold_101_9
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14915..15613)
DNA (699bp) protein (233aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2862880 bin=GWF1_Xanthomonadales_69_6 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ECF subfamily RNA polymerase sigma-24 factor Tax=GWF1_Xanthomonadales_69_6_curated
DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
scnpilot_expt_750_bf_scaffold_101_trna_14
unknown

Not on your lists

comp(15616..15688)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_101_10
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15842..16507)
DNA (666bp) protein (222aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI0002FC400F rbh
queC; putative 7-cyano-7-deazaguanine synthase, QueC protein
scnpilot_expt_750_bf_scaffold_101_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16587..17288)
DNA (702bp) protein (234aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis prote
7-carboxy-7-deazaguanine synthase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K061_STEMA rbh
radical SAM domain-containing protein
scnpilot_expt_750_bf_scaffold_101_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17384..18178)
DNA (795bp) protein (265aa)
Kinesin light chain n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SYD1_XANCT rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58004.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomo
TPR repeat containing exported protein Putative periplasmic protein contains a protein prenylyltransferase domain
scnpilot_expt_750_bf_scaffold_101_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18182..18700)
DNA (519bp) protein (173aa)
Outer membrane lipoprotein omp16 n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRY6_STEMA rbh
peptidoglycan-associated lipoprotein
Outer membrane lipoprotein omp16 {ECO:0000313|EMBL:CCH13827.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomo
scnpilot_expt_750_bf_scaffold_101_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18765..20084)
DNA (1320bp) protein (440aa)
Protein TolB n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6D9_9GAMM rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="S
protein tolB
scnpilot_expt_750_bf_scaffold_101_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20260..21336)
DNA (1077bp) protein (359aa)
membrane protein TolA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA7DFF rbh
Membrane protein TolA {ECO:0000313|EMBL:AHY58000.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomona
tolA; TolA transmembrane protein
scnpilot_expt_750_bf_scaffold_101_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21326..21754)
DNA (429bp) protein (143aa)
biopolymer transporter TolR n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6DA8E
Biopolymer transporter TolR {ECO:0000313|EMBL:AHY57999.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrop
protein TolR
scnpilot_expt_750_bf_scaffold_101_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21792..22568)
DNA (777bp) protein (259aa)
protein tolQ n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003087E74 rbh
Colicin transporter {ECO:0000313|EMBL:AHY57998.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas
tolQ; TolQ transport transmembrane protein
scnpilot_expt_750_bf_scaffold_101_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22579..23007)
DNA (429bp) protein (143aa)
thioesterase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003714F67
Stenotrophomonas maltophilia strain ZBG7B contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86112.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; X
thioesterase
scnpilot_expt_750_bf_scaffold_101_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23000..24040)
DNA (1041bp) protein (347aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteri
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRZ2_STEMA rbh
ruvB; Holliday junction DNA helicase RuvB
scnpilot_expt_750_bf_scaffold_101_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24176..26092)
DNA (1917bp) protein (639aa)
Probable potassium transport system protein kup n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CYX3_STEMA rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophom
Low affinity potassium transport system protein kup
scnpilot_expt_750_bf_scaffold_101_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26129..26764)
DNA (636bp) protein (212aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction DNA helicase RuvA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD10D0 rbh
ATP-dependent DNA helicase RuvA
scnpilot_expt_750_bf_scaffold_101_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26790..27317)
DNA (528bp) protein (176aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
Holliday junction resolvase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D746A6
ruvC; crossover junction endodeoxyribonuclease RuvC
scnpilot_expt_750_bf_scaffold_101_23
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27387..28133)
DNA (747bp) protein (249aa)
transcriptional regulator n=1 Tax=Xanthomonas RepID=UPI000263009D rbh
transcriptional regulatory protein
Probable transcriptional regulatory protein SB85_00285 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthom
scnpilot_expt_750_bf_scaffold_101_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28200..28850)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035FB938 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY57991.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomo
alpha/beta hydrolase fold domain-containing protein
scnpilot_expt_750_bf_scaffold_101_25
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28953..32033)
DNA (3081bp) protein (1027aa)
putative TonB dependent receptor protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A7A6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR65404.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_101_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32191..32715
DNA (525bp) protein (175aa)
RNA polymerase subunit sigma-24 n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000363E9A7
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU76810.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sour
ECF subfamily RNA polymerase sigma-24 factor
scnpilot_expt_750_bf_scaffold_101_27
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32712..33719
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000366BB98
anti-FecI sigma factor FecR; K07165 transmembrane sensor Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
FecR, iron siderophore sensor protein
scnpilot_expt_750_bf_scaffold_101_28
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33763..34287)
DNA (525bp) protein (175aa)
GCN5-related N-acetyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQJ5_PSEUU
Acetyltransferase {ECO:0000313|EMBL:AKC87332.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas
GCN5-like N-acetyltransferase
scnpilot_expt_750_bf_scaffold_101_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(34295..36052)
DNA (1758bp) protein (586aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CCP11365.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CCP11365.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadac
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003AAA154 rbh
Displaying items 1-30 of 194 in total

View Taxonomy