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scnpilot_expt_750_bf_scaffold_350

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Displaying items 1-30 of 73 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_350_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)
translation elongation factor Tu n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D46
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacter
scnpilot_expt_750_bf_scaffold_350_trna_4
unknown

Not on your lists

comp(150..222)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_350_trna_3
unknown

Not on your lists

comp(263..333)
DNA (71bp)
transferRNA
scnpilot_expt_750_bf_scaffold_350_trna_2
unknown

Not on your lists

comp(364..446)
DNA (83bp)
transferRNA
scnpilot_expt_750_bf_scaffold_350_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(582..1601)
DNA (1020bp) protein (340aa)
asparaginase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030B08C1 rbh
Asparaginase {ECO:0000313|EMBL:AHY60176.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizoph
peptidase T2 asparaginase 2
scnpilot_expt_750_bf_scaffold_350_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1753..2775)
DNA (1023bp) protein (341aa)
peptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002ECA2BF rbh
Peptidase {ECO:0000313|EMBL:AHY60177.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila
peptidase S51 dipeptidase E
scnpilot_expt_750_bf_scaffold_350_4
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2955..5750
DNA (2796bp) protein (932aa)
TonB-dependent receptor n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L0F1_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EED37554.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomo
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_350_5
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6049..7140)
DNA (1092bp) protein (364aa)
Ribosome-binding ATPase YchF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKM8_9GAMM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibact
GTP-binding protein YchF
scnpilot_expt_750_bf_scaffold_350_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7217..7798)
DNA (582bp) protein (194aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U5L1_STEMA rbh
scnpilot_expt_750_bf_scaffold_350_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7850..8452)
DNA (603bp) protein (201aa)
50S ribosomal protein L25 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYM1_STEMA rbh
50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=868597 sp
scnpilot_expt_750_bf_scaffold_350_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8560..9519)
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000315AF19 rbh
scnpilot_expt_750_bf_scaffold_350_trna_1
unknown

Not on your lists

comp(9655..9728)
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_350_9
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9740..10612)
DNA (873bp) protein (291aa)
ispE; 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=6 Tax=Xanthomonas axonopodis RepID=UPI0002E79573 rbh
scnpilot_expt_750_bf_scaffold_350_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10609..11259)
DNA (651bp) protein (217aa)
Outer-membrane lipoprotein LolB n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TQC0_STEMA
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
lolB; outer membrane lipoprotein LolB
scnpilot_expt_750_bf_scaffold_350_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11256..12941)
DNA (1686bp) protein (562aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037BA126 rbh
Membrane protein {ECO:0000313|EMBL:AHY60187.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhi
hypothetical protein
scnpilot_expt_750_bf_scaffold_350_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13010..14293
DNA (1284bp) protein (428aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
hemA; glutamyl-tRNA reductase (EC:1.2.1.70)
glutamyl-tRNA reductase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D34180 rbh
scnpilot_expt_750_bf_scaffold_350_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14271..15356
DNA (1086bp) protein (362aa)
peptide chain release factor 1 n=1 Tax=Xanthomonas sacchari RepID=UPI000262B3B3 rbh
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
scnpilot_expt_750_bf_scaffold_350_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15448..17169
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031D4603 rbh
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY {ECO:0000313|EMBL:AJC45780.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
scnpilot_expt_750_bf_scaffold_350_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17166..17414)
DNA (249bp) protein (83aa)
Putative transmembrane protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K0P3_STEMA
hypothetical protein
Putative transmembrane protein {ECO:0000313|EMBL:AEM51440.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas
scnpilot_expt_750_bf_scaffold_350_16
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17411..18757)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SK93_STRM5 rbh
Membrane protein {ECO:0000313|EMBL:EZP47738.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp
hypothetical protein
scnpilot_expt_750_bf_scaffold_350_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18779..19918)
DNA (1140bp) protein (380aa)
virion core protein (lumpy skin disease virus) n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F94BA0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EMI50071.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas malto
hypothetical protein
scnpilot_expt_750_bf_scaffold_350_18
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20135..20914
DNA (780bp) protein (260aa)
polyphosphate kinase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00035F8426 rbh
polyphosphate kinase rbh
Polyphosphate kinase {ECO:0000313|EMBL:AJC45784.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;
scnpilot_expt_750_bf_scaffold_350_19
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20987..21583)
DNA (597bp) protein (199aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0B8S3_9XANT
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AJQ88971.1}; TaxID=129394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzico
scnpilot_expt_750_bf_scaffold_350_20
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21580..22854)
DNA (1275bp) protein (425aa)
ribonuclease BN n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FED8BB rbh
UPF0761 membrane protein BW38_03329 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" sour
hypothetical protein
scnpilot_expt_750_bf_scaffold_350_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22932..23525
DNA (594bp) protein (198aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xant
NAD(P)H quinone oxidoreductase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003028025 rbh
Trp repressor binding protein
scnpilot_expt_750_bf_scaffold_350_22
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23522..23866
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYK9_STEMA
hypothetical protein
Membrane protein {ECO:0000313|EMBL:EZP43853.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp
scnpilot_expt_750_bf_scaffold_350_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23964..24452
DNA (489bp) protein (163aa)
asparaginase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F4F984
Stenotrophomonas maltophilia strain ZBG7B contig_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86842.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; X
asparaginase/glutaminase
scnpilot_expt_750_bf_scaffold_350_24
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24454..24927
DNA (474bp) protein (158aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SQM3_XANOP
prolyl-tRNA synthetase
scnpilot_expt_750_bf_scaffold_350_25
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25060..26157)
DNA (1098bp) protein (366aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomona
branched-chain amino acid aminotransferase (EC:2.6.1.42)
branched-chain amino acid aminotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036FD407 rbh
scnpilot_expt_750_bf_scaffold_350_26
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26224..26775)
DNA (552bp) protein (184aa)
FeS assembly SUF system protein SufT n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035C5437 rbh
FeS assembly SUF system protein SufT {ECO:0000313|EMBL:AHY60201.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="
hypothetical protein
Displaying items 1-30 of 73 in total

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