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scnpilot_expt_750_bf_scaffold_544

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Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_544_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198..1127)
DNA (930bp) protein (310aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQR7_9SPHN rbh
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65939.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
scnpilot_expt_750_bf_scaffold_544_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1217..1918
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I2_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55105.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2418)
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I3_NOVAD
Transcriptional regulators {ECO:0000313|EMBL:GAO55106.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
MarR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_544_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2640..5027
DNA (2388bp) protein (796aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5A76F rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55107.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_544_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5171..6748
DNA (1578bp) protein (526aa)
FAD linked oxidase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4B1_NOVAD rbh
FAD linked oxidase-like protein
FAD linked oxidase-like protein {ECO:0000313|EMBL:ABD27312.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
scnpilot_expt_750_bf_scaffold_544_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6745..7164
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4B2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27311.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
scnpilot_expt_750_bf_scaffold_544_7
unknown

Not on your lists

7164..7547
DNA (384bp) protein (128aa)
twin-arginine translocation pathway signal protein
scnpilot_expt_750_bf_scaffold_544_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7544..7879)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D7BBE
Uncharacterized protein {ECO:0000313|EMBL:KEZ18745.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7879..8883)
DNA (1005bp) protein (335aa)
Putative 2-nitropropane dioxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHQ5_9SPHN rbh
Putative 2-nitropropane dioxygenase {ECO:0000313|EMBL:GAD47467.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source=
2-nitropropane dioxygenase
scnpilot_expt_750_bf_scaffold_544_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9079..11265
DNA (2187bp) protein (729aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:R
katG; catalase/peroxidase (EC:1.11.1.21)
Catalase-peroxidase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z522_9SPHN rbh
scnpilot_expt_750_bf_scaffold_544_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11470..12246
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F18BD8 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO39284.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
membrane protein
scnpilot_expt_750_bf_scaffold_544_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12317..13150)
DNA (834bp) protein (278aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
methionine aminopeptidase, type I (EC:3.4.11.18)
methionine aminopeptidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4A48E rbh
scnpilot_expt_750_bf_scaffold_544_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13217..14044)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9B7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57003.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14155..15573
DNA (1419bp) protein (473aa)
Peptidase B {ECO:0000313|EMBL:GAO57002.1}; EC=3.4.11.23 {ECO:0000313|EMBL:GAO57002.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novos
leucyl aminopeptidase (EC:3.4.11.1)
Leucyl aminopeptidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II83_9SPHN rbh
scnpilot_expt_750_bf_scaffold_544_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15654..15986
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B647D1
Uncharacterized protein {ECO:0000313|EMBL:GAD49459.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15983..16909
DNA (927bp) protein (309aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_0111
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3X5_9SPHN
scnpilot_expt_750_bf_scaffold_544_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17250..17588
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6CDC7
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KHA65474.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphi
nitrogen regulatory protein P-II 1
scnpilot_expt_750_bf_scaffold_544_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17729..19138
DNA (1410bp) protein (470aa)
Glutamine synthetase type I {ECO:0000313|EMBL:GAO57006.1}; EC=6.3.1.2 {ECO:0000313|EMBL:GAO57006.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
L-glutamine synthetase (EC:6.3.1.2)
glutamine synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43AE2 rbh
scnpilot_expt_750_bf_scaffold_544_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19473..23693)
DNA (4221bp) protein (1407aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C5_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD25548.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23693..26023)
DNA (2331bp) protein (777aa)
Surface antigen (D15) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C6_NOVAD rbh
surface antigen (D15)
Surface antigen (D15) {ECO:0000313|EMBL:ABD25547.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
scnpilot_expt_750_bf_scaffold_544_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25974..26885)
DNA (912bp) protein (304aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase n=1 Tax=Novosphingobium sp. AP12 RepID=J3A0V6_9SPHN rbh
Arginyl-tRNA-protein transferase {ECO:0000313|EMBL:AKH42419.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source
scnpilot_expt_750_bf_scaffold_544_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27099..28349)
DNA (1251bp) protein (417aa)
threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD85_9SPHN rbh
Threonine dehydratase {ECO:0000313|EMBL:EGD57319.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
scnpilot_expt_750_bf_scaffold_544_23
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28541..29395
DNA (855bp) protein (285aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:CCA91514.1}; EC=1.1.1.31 {ECO:0000313|EMBL:CCA91514.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
3-hydroxyisobutyrate dehydrogenase n=2 Tax=Novosphingobium RepID=F6II72_9SPHN rbh
oxidoreductase
scnpilot_expt_750_bf_scaffold_544_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29392..31092
DNA (1701bp) protein (567aa)
Amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9D1_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53831.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
amidohydrolase
scnpilot_expt_750_bf_scaffold_544_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31326..32117)
DNA (792bp) protein (264aa)
Sec-independent protein translocase protein TatC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLZ2_9SPHN rbh
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
MttB family protein
scnpilot_expt_750_bf_scaffold_544_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32121..32570)
DNA (450bp) protein (150aa)
Sec-independent protein translocase protein TatB n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IVE3_9SPHN
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
preprotein translocase subunit TatB
scnpilot_expt_750_bf_scaffold_544_27
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32612..32857)
DNA (246bp) protein (82aa)
Sec-independent protein translocase protein TatA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECX2_9SPHN
preprotein translocase subunit TatA
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
scnpilot_expt_750_bf_scaffold_544_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32959..33552)
DNA (594bp) protein (198aa)
Condensin subunit ScpB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD93_9SPHN
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
hypothetical protein
scnpilot_expt_750_bf_scaffold_544_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33549..34343)
DNA (795bp) protein (265aa)
Segregation and condensation protein A n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WL36_9SPHN rbh
Segregation and condensation protein A {ECO:0000313|EMBL:AKH42428.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;"
segregation and condensation protein A
scnpilot_expt_750_bf_scaffold_544_30
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34340..35356)
DNA (1017bp) protein (339aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphing
beta-N-acetylhexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKT7_9SPHN rbh
Displaying items 1-30 of 38 in total

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