ggKbase home page

scnpilot_expt_750_bf_scaffold_832

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_832_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

191..730
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8S7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59330.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_2
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(754..1056)
DNA (303bp) protein (101aa)
Helix-turn-helix domain-containing protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LN66_9PROT
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EKF06377.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" so
helix-turn-helix domain-containing protein
scnpilot_expt_750_bf_scaffold_832_3
unknown

Not on your lists

comp(1209..1445)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_832_4
unknown

Not on your lists

comp(1489..1755)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_832_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1911..2240
DNA (330bp) protein (110aa)
Single-stranded DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4N0_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
single-strand binding protein/primosomal replication protein n
scnpilot_expt_750_bf_scaffold_832_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2292..2621
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59326.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2689..3372)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML66_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16357.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_8
Sphingomonas sp. DC-6, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3805..4980)
DNA (1176bp) protein (392aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA08940.1}; TaxID=1283312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_832_9
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5008..5397)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GN47_9SPHN
PilT protein {ECO:0000313|EMBL:KEQ52929.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum
PilT protein
scnpilot_expt_750_bf_scaffold_832_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5384..5656)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQ42_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02108.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
AbrB family transcriptional regulator
scnpilot_expt_750_bf_scaffold_832_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5956..6210
DNA (255bp) protein (85aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T4_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD59323.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
parD; Protein parD
scnpilot_expt_750_bf_scaffold_832_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6207..6524
DNA (318bp) protein (106aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4M3_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD60434.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
putative plasmid stabilization protein
scnpilot_expt_750_bf_scaffold_832_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6625..7206
DNA (582bp) protein (194aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBN0_ERYLH
Tyrosine recombinase XerC {ECO:0000313|EMBL:AKH44025.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alter
site-specific recombinase, phage integrase
scnpilot_expt_750_bf_scaffold_832_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7172..7609
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HGX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12262.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7759..9273
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RX59_9SPHN rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48131.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
scnpilot_expt_750_bf_scaffold_832_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9350..12010
DNA (2661bp) protein (887aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9G7_SPHWW rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_832_17
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12233..12832
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBQ2_9SPHN
transglycosylase
Uncharacterized protein {ECO:0000313|EMBL:EHJ61334.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
scnpilot_expt_750_bf_scaffold_832_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12836..13138
DNA (303bp) protein (101aa)
Type IV secretory pathway, VirB2 component (Pilin) n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE1_9SPHN
TrbC/VIRB2 family protein {ECO:0000313|EMBL:AKH43939.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobact
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_19
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13145..13426
DNA (282bp) protein (94aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZE4_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB17428.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
type VI secretion protein
scnpilot_expt_750_bf_scaffold_832_20
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13440..15851
DNA (2412bp) protein (804aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J660_9SPHN rbh
Type VI secretion protein {ECO:0000313|EMBL:EQB17429.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
type VI secretion protein
scnpilot_expt_750_bf_scaffold_832_21
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15848..17074
DNA (1227bp) protein (409aa)
Type IV secretion system protein VirB6 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJ31_9SPHN rbh
type IV secretion system protein VirB6
Type IV secretion system protein VirB6 {ECO:0000313|EMBL:CCA91657.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
scnpilot_expt_750_bf_scaffold_832_22
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17071..18048
DNA (978bp) protein (326aa)
Type IV secretion system protein VirB9 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU42_9SPHN
Type IV secretion system protein VirB9 {ECO:0000313|EMBL:EZP81388.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novos
type VI secretion protein
scnpilot_expt_750_bf_scaffold_832_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18051..19151
DNA (1101bp) protein (367aa)
Type IV secretory pathway, VirB10 component n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE7_9SPHN rbh
Scaffold2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33837.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
type VI secretion protein
scnpilot_expt_750_bf_scaffold_832_24
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19148..20116
DNA (969bp) protein (323aa)
Type IV secretion system protein VirB11 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WI78_9SPHN rbh
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EIZ79918.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sour
type VI secretion protein
scnpilot_expt_750_bf_scaffold_832_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20152..20796
DNA (645bp) protein (215aa)
XRE family transcriptional regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0G190_9SPHN
PhoB
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:AKH43944.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Alt
scnpilot_expt_750_bf_scaffold_832_26
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20979..21227
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBH4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KER35075.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium luc
hypothetical protein
scnpilot_expt_750_bf_scaffold_832_27
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21289..21732
DNA (444bp) protein (148aa)
transposase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3ADF5
Transposase {ECO:0000313|EMBL:KHL24982.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
transposase
scnpilot_expt_750_bf_scaffold_832_28
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21729..22082
DNA (354bp) protein (118aa)
transposase ISAfe4 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B707D1
Transposase and inactivated derivative {ECO:0000313|EMBL:EAT07217.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
isocitrate lyase
scnpilot_expt_750_bf_scaffold_832_29
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22119..23342
DNA (1224bp) protein (408aa)
transposase IS66 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F4D9 rbh
Transposase and inactivated derivative {ECO:0000313|EMBL:EAT07218.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
transposase
Displaying 29 items

View Taxonomy