ggKbase home page

scnpilot_expt_750_bf_scaffold_1293

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1293_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3..329
DNA (327bp) protein (109aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK78_9GAMM
scnpilot_expt_750_bf_scaffold_1293_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

472..1737
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G1R5_RHIML
DMT superfamily permease {ECO:0000313|EMBL:KFC65241.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1293_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1814..2308)
DNA (495bp) protein (165aa)
Small protein A (TmRNA-binding) n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0A0_9RHIZ
SmpA/OmlA domain protein {ECO:0000313|EMBL:KFC65242.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SmpA/OmlA domain-containing protein
scnpilot_expt_750_bf_scaffold_1293_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2456..2998
DNA (543bp) protein (181aa)
ubiquinol-cytochrome C chaperone n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00036D41F3
Ubiquinol-cytochrome C chaperone {ECO:0000313|EMBL:KFC65243.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1293_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2988..3548
DNA (561bp) protein (187aa)
metal-binding protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035E530D
Uncharacterized protein {ECO:0000313|EMBL:KFC65244.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1293_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3721..4779
DNA (1059bp) protein (353aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase
Phosphate acyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0A3_9RHIZ rbh
plsX; Fatty acid/phospholipid synthesis protein
scnpilot_expt_750_bf_scaffold_1293_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4792..5769
DNA (978bp) protein (326aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-ACP synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035CB2E8
3-oxoacyl-(acyl-carrier-protein) synthase III
scnpilot_expt_750_bf_scaffold_1293_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5963..6277
DNA (315bp) protein (105aa)
integration host factor subunit alpha n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E38615
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1502851 species="Bacteria; Proteobacte
ihfA; integration host factor subunit alpha
scnpilot_expt_750_bf_scaffold_1293_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6274..6801
DNA (528bp) protein (176aa)
Putative transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0A6_9RHIZ
Transcriptional regulator, MerR family {ECO:0000313|EMBL:KFC65248.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. L
MerR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1293_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6982..7299
DNA (318bp) protein (106aa)
Molecular chaperone, SugES-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJP5_9RHIZ
Small multidrug resistance protein {ECO:0000313|EMBL:KFC65250.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.
small multidrug resistance protein
scnpilot_expt_750_bf_scaffold_1293_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7309..7479)
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC65251.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_expt_750_bf_scaffold_1293_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7657..8163
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TN15_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC69285.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1293_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8173..9153)
DNA (981bp) protein (327aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodovulum sp. PH10 RepID=J6JDW8_9RHOB rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFC65252.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. L
LysR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1293_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..9591)
DNA (273bp) protein (91aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQA7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC65253.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DoxX family protein
scnpilot_expt_750_bf_scaffold_1293_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9818..10750
DNA (933bp) protein (311aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3P5_STAND
Glyoxalase family protein {ECO:0000313|EMBL:KFC65254.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_expt_750_bf_scaffold_1293_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10830..11453
DNA (624bp) protein (208aa)
hydrolase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D4783
Putative esterase {ECO:0000313|EMBL:KFC65255.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1293_17
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11513..12565)
DNA (1053bp) protein (351aa)
Bacterial regulatory protein, LacI family protein 4 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HLI7_ACHXA rbh
LacI family transcriptional regulator rbh
Bacterial regulatory protein, LacI family protein 4 {ECO:0000313|EMBL:ADP18188.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;"
scnpilot_expt_750_bf_scaffold_1293_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12591..13619)
DNA (1029bp) protein (343aa)
Putative deacylase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QAB2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ69524.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium dia
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_1293_19
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13718..14512)
DNA (795bp) protein (265aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035DAA54 rbh
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJN09500.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacter
ABC transporter substrate-binding protein rbh
scnpilot_expt_750_bf_scaffold_1293_20
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14554..15282)
DNA (729bp) protein (243aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000379E86F rbh
glnQ; glutamine ABC transporter; ATP-binding component rbh
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EJN09499.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyr
scnpilot_expt_750_bf_scaffold_1293_21
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15269..15919)
DNA (651bp) protein (217aa)
amino acid ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031184AF rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:KGT76535.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhiz
ABC transporter permease
scnpilot_expt_750_bf_scaffold_1293_22
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15935..16594)
DNA (660bp) protein (220aa)
ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035EFBBB rbh
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAC49245.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhiz
scnpilot_expt_750_bf_scaffold_1293_23
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16602..17900)
DNA (1299bp) protein (433aa)
D-serine deaminase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJP5_BRAJP rbh
D-serine deaminase rbh
D-serine deaminase {ECO:0000313|EMBL:BAL11105.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonic
scnpilot_expt_750_bf_scaffold_1293_trna_1
unknown

Not on your lists

18165..18239
DNA (75bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1293_24
unknown

Not on your lists

18466..18912
DNA (447bp) protein (149aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1293_25
unknown

Not on your lists

19523..19624
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1293_26
Agrobacterium phage 7-7-1, Caudovirales, Viruses

Not on your lists

comp(19621..19833)
DNA (213bp) protein (71aa)
Putative membrane protein n=1 Tax=Agrobacterium phage 7-7-1 RepID=J7FAQ2_9CAUD
Putative membrane protein {ECO:0000313|EMBL:AFH19708.1}; TaxID=1161931 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Agrobacterium phage 7-7-1.;"
hypothetical protein
Displaying 27 items

View Taxonomy