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scnpilot_expt_750_bf_scaffold_758

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_758_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1129
DNA (1128bp) protein (376aa)
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:KFC74315.1}; EC=3.4.21.92 {ECO:0000313|EMBL:KFC74315.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F6BF8E
ATP-dependent Clp protease ATP-binding protein ClpA
scnpilot_expt_750_bf_scaffold_758_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1377..2099
DNA (723bp) protein (241aa)
AzlC family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILB8_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC74317.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AzlC family protein
scnpilot_expt_750_bf_scaffold_758_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2096..2458
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UE55_9RHOB
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:KFC74318.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source=
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2455..3030)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CB79_METED
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KFC74319.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bo
RNA polymerase sigma factor
scnpilot_expt_750_bf_scaffold_758_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3326..3793)
DNA (468bp) protein (156aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2L5_9BRAD
alkylhydroperoxidase
scnpilot_expt_750_bf_scaffold_758_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3855..4283)
DNA (429bp) protein (143aa)
Histidine triad (HIT) protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVX7_9RHIZ
Histidine triad (HIT) protein {ECO:0000313|EMBL:KFC74321.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
scnpilot_expt_750_bf_scaffold_758_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4372..5148)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003618816
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_expt_750_bf_scaffold_758_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5138..6373)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZY3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC74323.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protein of unassigned function
scnpilot_expt_750_bf_scaffold_758_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6370..7122)
DNA (753bp) protein (251aa)
Putative glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:KFC74324.1}; EC=3.1.4.46 {ECO:0000313|EMBL:KFC74324.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8E14F
Glycerophosphoryl diester phosphodiesterase
scnpilot_expt_750_bf_scaffold_758_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7122..7595)
DNA (474bp) protein (158aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZY5_9RHIZ
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:KFC74325.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
endoribonuclease L-PSP
scnpilot_expt_750_bf_scaffold_758_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7642..8637
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036B6A24
Uncharacterized protein {ECO:0000313|EMBL:KFC74326.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8594..9922)
DNA (1329bp) protein (443aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1502851 species="Bacteria; Proteobacteria; Al
DNA polymerase IV (EC:2.7.7.7)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D4F0DC rbh
scnpilot_expt_750_bf_scaffold_758_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9942..10238)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003622CB7
Uncharacterized protein {ECO:0000313|EMBL:KFC74328.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10374..10742
DNA (369bp) protein (123aa)
Response regulator receiver protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0E6_9RHIZ
Response regulator receiver protein {ECO:0000313|EMBL:KFC74329.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85
response regulator receiver
scnpilot_expt_750_bf_scaffold_758_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10758..12134
DNA (1377bp) protein (459aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFA3_METS4 rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:KFC74330.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" sour
response regulator receiver modulated diguanylate cyclase
scnpilot_expt_750_bf_scaffold_758_16
unknown

Not on your lists

comp(12465..12722)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_758_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12877..13044)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=5 Tax=Bartonella RepID=N6VMM0_9RHIZ
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
50S ribosomal protein L33
scnpilot_expt_750_bf_scaffold_758_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13201..13935)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B4351 rbh
NUDIX hydrolase {ECO:0000313|EMBL:KFC74334.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NUDIX hydrolase
scnpilot_expt_750_bf_scaffold_758_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13932..14378)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A1J9_RHIET
Uncharacterized protein {ECO:0000313|EMBL:KFC74335.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14378..16732)
DNA (2355bp) protein (785aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1502851 species="Bacteria; Proteobacteria; Alp
ribonuclease R (EC:3.1.13.1) rbh
Ribonuclease R n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZZ9_9RHIZ rbh
scnpilot_expt_750_bf_scaffold_758_21
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16915..17565
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TY70_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE11448.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17975..18358)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPY2_METS4
Photosynthetic reaction center H subunit {ECO:0000313|EMBL:KFC74342.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_758_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18384..19262
DNA (879bp) protein (293aa)
AraC family transcriptional regulator n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003669809
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC74343.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.
AraC family transcriptional regulator
scnpilot_expt_750_bf_scaffold_758_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19343..20329
DNA (987bp) protein (329aa)
6-phosphogluconate dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FE2_BRADU
6-phosphogluconate dehydrogenase (Decarboxylating) {ECO:0000313|EMBL:KFC74344.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source=
6-phosphogluconate dehydrogenase
scnpilot_expt_750_bf_scaffold_758_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20347..20859
DNA (513bp) protein (171aa)
gntK; gluconate kinase (EC:2.7.1.12)
Gluconate kinase 2 gluconate transport, GNT I system n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B1S3_METEA
Uncharacterized protein {ECO:0000313|EMBL:KFC74345.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_expt_750_bf_scaffold_758_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20971..22377)
DNA (1407bp) protein (469aa)
multicopper oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00037F98D0 rbh
Multicopper oxidase type 3 {ECO:0000313|EMBL:KFC69044.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
multicopper oxidase type 3
scnpilot_expt_750_bf_scaffold_758_trna_1
unknown

Not on your lists

22620..22701
DNA (82bp)
transferRNA
scnpilot_expt_750_bf_scaffold_758_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22901..24346
DNA (1446bp) protein (482aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E97F2B rbh
tig; trigger factor
scnpilot_expt_750_bf_scaffold_758_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24674..25063
DNA (390bp) protein (130aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y5S4_9RHIZ
scnpilot_expt_750_bf_scaffold_758_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25336..26607
DNA (1272bp) protein (424aa)
ATP-dependent protease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030971C2 rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
clpX; ATP-dependent Clp protease ATP-binding subunit clpX
Displaying items 1-30 of 47 in total

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