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scnpilot_expt_750_bf_scaffold_488

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_488_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1149)
DNA (1149bp) protein (383aa)
PUA domain containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THC4_NIAKG
PUA domain containing protein
PUA domain containing protein {ECO:0000313|EMBL:AEW01734.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koree
scnpilot_expt_750_bf_scaffold_488_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1311..1883
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003827B0B
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphi
protein grpE
scnpilot_expt_750_bf_scaffold_488_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1936..3087
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR67_CHIPD
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihu
chaperone protein DnaJ
scnpilot_expt_750_bf_scaffold_488_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3089..3508)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L4W0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KHD04168.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
hypothetical protein
scnpilot_expt_750_bf_scaffold_488_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3668..4855)
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; N
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG
integral membrane sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_488_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4914..5981
DNA (1068bp) protein (356aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X0_NIAKG rbh
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEV96908.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koree
scnpilot_expt_750_bf_scaffold_488_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6030..6233
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF11_CHIPD">RepID=C7PF11_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC93118.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_488_trna_1
unknown

Not on your lists

6347..6419
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_488_trna_2
unknown

Not on your lists

6465..6550
DNA (86bp)
transferRNA
scnpilot_expt_750_bf_scaffold_488_8
unknown

Not on your lists

comp(6734..6925)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_488_9
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7910..9013)
DNA (1104bp) protein (368aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tam
integral membrane sensor signal transduction histidine kinase
Y_Y_Y domain-containing protein,putative transcriptional regulator,GAF domain-containing protein id=2041397 bin=GWD2_Bacteroidetes_40_43 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
scnpilot_expt_750_bf_scaffold_488_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9155..10171)
DNA (1017bp) protein (339aa)
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ5_NIAKG
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO45559.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;"
AraC family transcriptional regulator
scnpilot_expt_750_bf_scaffold_488_11
unknown

Not on your lists

comp(10258..10395)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_488_12
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10560..10982)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003651D84
Uncharacterized protein {ECO:0000313|EMBL:ETZ21843.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V4
xanthan lyase
scnpilot_expt_750_bf_scaffold_488_13

Not on your lists

comp(10922..11200)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003651D84
Xanthan lyase {ECO:0000313|EMBL:KHD90158.1}; Flags: Fragment;; TaxID=1511133 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium Zodletone_IIa.;"
xanthan lyase
scnpilot_expt_750_bf_scaffold_488_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11480..12838)
DNA (1359bp) protein (453aa)
Chitinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB77_9SPHI rbh
Putative hydrolase {ECO:0000313|EMBL:GAO41353.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter pet
scnpilot_expt_750_bf_scaffold_488_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12871..14457)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB79_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO41352.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
lipoprotein
scnpilot_expt_750_bf_scaffold_488_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14475..17957)
DNA (3483bp) protein (1161aa)
Putative outer membrane protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB80_9SPHI rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO41351.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavi
TonB-dependent receptor plug
scnpilot_expt_750_bf_scaffold_488_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17989..18996)
DNA (1008bp) protein (336aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVF4_SOLCM
Putative anti-sigma factor {ECO:0000313|EMBL:GAO41350.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumiba
Fe2+-dicitrate sensor, membrane protein
scnpilot_expt_750_bf_scaffold_488_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19049..19630)
DNA (582bp) protein (194aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHF5_9SPHI
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO41349.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;"
sigma-70 family RNA polymerase sigma factor
scnpilot_expt_750_bf_scaffold_488_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19665..20603)
DNA (939bp) protein (313aa)
Chitinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB78_9SPHI
Putative glycosidase {ECO:0000313|EMBL:GAO44515.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter p
glycoside hydrolase
scnpilot_expt_750_bf_scaffold_488_20
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21145..23553
DNA (2409bp) protein (803aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003824F34
TonB-dependent receptor {ECO:0000313|EMBL:KGO92241.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sub
TonB-dependent siderophore receptor
scnpilot_expt_750_bf_scaffold_488_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23756..24505
DNA (750bp) protein (250aa)
Transcriptional regulator, DeoR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8M4_NIAKG
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AEW00196.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niaste
scnpilot_expt_750_bf_scaffold_488_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24527..27952
DNA (3426bp) protein (1142aa)
TonB-dependent receptor n=1 Tax=Pedobacter agri RepID=UPI000299D66F rbh
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHF16810.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 1943
scnpilot_expt_750_bf_scaffold_488_23
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27964..29796
DNA (1833bp) protein (611aa)
glycan metabolism protein RagB n=1 Tax=Pedobacter agri RepID=UPI000299D498 rbh
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACU06329.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter hepar
scnpilot_expt_750_bf_scaffold_488_24
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29870..30844)
DNA (975bp) protein (325aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EPR65683.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EPR65683.1};; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacte
UDP-glucose 4-epimerase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WNC3_9BACT
NAD-dependent epimerase/dehydratase
scnpilot_expt_750_bf_scaffold_488_25
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30982..32007
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AD02A rbh
Uncharacterized protein {ECO:0000313|EMBL:KFF15842.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium
hypothetical protein
scnpilot_expt_750_bf_scaffold_488_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32070..33488)
DNA (1419bp) protein (473aa)
amidohydrolase n=1 Tax=Eudoraea adriatica RepID=UPI00036A714B rbh
hypothetical protein; K12941 aminobenzoyl-glutamate utilization protein B Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_488_27
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33608..34303
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EB43_RUNSL rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO42543.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_488_28
unknown

Not on your lists

34352..34819
DNA (468bp) protein (156aa)

This feature has no annotations

Displaying items 1-30 of 49 in total

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