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scnpilot_expt_750_bf_scaffold_754

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_754_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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1..483
DNA (483bp) protein (161aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378C320
putative L-arabinose isomerase
scnpilot_expt_750_bf_scaffold_754_2
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

635..3715
DNA (3081bp) protein (1027aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AC5DF rbh
Uncharacterized protein {ECO:0000313|EMBL:ETZ23774.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V4
glycoside hydrolase family protein
scnpilot_expt_750_bf_scaffold_754_3
unknown

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comp(3678..3791)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_754_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3855..4859
DNA (1005bp) protein (335aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855, ECO:0000256|SAAS:SAAS00181
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGK5_NIAKG
D-fructose 1,6-bisphosphatase
scnpilot_expt_750_bf_scaffold_754_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4917..5243)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3I8_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE52965.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobact
scnpilot_expt_750_bf_scaffold_754_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5521..5976)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000363D886
Uncharacterized protein {ECO:0000313|EMBL:GAO43532.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_754_7
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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6142..7413
DNA (1272bp) protein (424aa)
Putative uncharacterized protein id=3355116 bin=GWF2_Bacteroidetes_41_9 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
hypothetical protein Tax=GWA2_Bacteroidetes_40_15_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_754_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7600..9924
DNA (2325bp) protein (775aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIZ6_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ADB37010.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 3390
hypothetical protein
scnpilot_expt_750_bf_scaffold_754_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9961..11415
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW68_DYAFD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93200.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
scnpilot_expt_750_bf_scaffold_754_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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11432..13588
DNA (2157bp) protein (719aa)
Planctomycete cytochrome C n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW67_DYAFD rbh
cytochrome C
Planctomycete cytochrome C {ECO:0000313|EMBL:ACT93199.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain
scnpilot_expt_750_bf_scaffold_754_11
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(13612..14613)
DNA (1002bp) protein (334aa)
hypothetical protein VspiD_28515 id=4436996 bin=GWF2_Lentisphaerae_49_21 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
hypothetical protein Tax=GWF2_Lentisphaerae_49_21_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_754_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14635..15633)
DNA (999bp) protein (333aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales;
Methylenetetrahydrofolate reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V2_NIAKG rbh
5,10-methylenetetrahydrofolate reductase (NAD(P))
scnpilot_expt_750_bf_scaffold_754_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15712..16509
DNA (798bp) protein (266aa)
Sulfate-transporting ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V1_NIAKG rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAO42052.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" s
sulfate-transporting ATPase rbh
scnpilot_expt_750_bf_scaffold_754_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16699..18207
DNA (1509bp) protein (503aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V0_NIAKG
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEW02307.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koree
scnpilot_expt_750_bf_scaffold_754_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18209..19159
DNA (951bp) protein (317aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THU7_NIAKG rbh
Phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AEV98542.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis
scnpilot_expt_750_bf_scaffold_754_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19216..19971
DNA (756bp) protein (252aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEW02306.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEW02306.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacterial
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8U9_NIAKG rbh
3-oxoacyl-(acyl-carrier-protein) reductase
scnpilot_expt_750_bf_scaffold_754_17
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20130..20972
DNA (843bp) protein (281aa)
MscS Mechanosensitive ion channel n=1 Tax=Niabella soli DSM 19437 RepID=H1NKW8_9SPHI rbh
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KGO97069.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavo
mechanosensitive ion channel protein
scnpilot_expt_750_bf_scaffold_754_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21072..21671)
DNA (600bp) protein (200aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagacea
Superoxide dismutase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ05_9SPHI
superoxide dismutase
scnpilot_expt_750_bf_scaffold_754_trna_1
unknown

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21891..21964
DNA (74bp)
transferRNA
Displaying 19 items

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