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scnpilot_expt_750_bf_scaffold_608

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_608_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..766
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Methylobacterium RepID=B1ZCH0_METPB
Membrane protein {ECO:0000313|EMBL:KIZ44759.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustri
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1350..1715
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKM3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42131.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2099..2302)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRK9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KIZ44761.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
scnpilot_expt_750_bf_scaffold_608_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2313..3074)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBY5_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:KIZ44804.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustri
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..6486)
DNA (3240bp) protein (1080aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L9_9BRAD
Cation transporter {ECO:0000313|EMBL:KIZ44762.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palust
heavy metal efflux pump CzcA
scnpilot_expt_750_bf_scaffold_608_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6490..7701)
DNA (1212bp) protein (404aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L8_9BRAD
Cation transporter {ECO:0000313|EMBL:KIZ44763.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palust
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_608_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7736..8014)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L7_9BRAD
NreA {ECO:0000313|EMBL:KIZ44764.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8099..8377
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L6_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KIZ44765.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8387..9673
DNA (1287bp) protein (429aa)
Cation diffusion facilitator family transporter n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L5_9BRAD
Cation transporter {ECO:0000313|EMBL:KIZ44766.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palust
cation diffusion facilitator transporter family protein
scnpilot_expt_750_bf_scaffold_608_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10933..12210
DNA (1278bp) protein (426aa)
Outer membrane efflux protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF88_NITHX rbh
Divalent cation transporter {ECO:0000313|EMBL:KIZ44768.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomon
outer membrane efflux protein
scnpilot_expt_750_bf_scaffold_608_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..13157
DNA (951bp) protein (317aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF87_NITHX rbh
Hemolysin D {ECO:0000313|EMBL:KIZ44805.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_608_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13147..13512
DNA (366bp) protein (122aa)
Nitrogen regulatory protein P-II (GlnB, GlnK) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF86_NITHX
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:KIZ44769.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseu
nitrogen regulatory protein P-II (GlnB, GlnK)
scnpilot_expt_750_bf_scaffold_608_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13505..16714
DNA (3210bp) protein (1070aa)
Heavy metal efflux pump CzcA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF85_NITHX rbh
Cation transporter {ECO:0000313|EMBL:KIZ44770.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palust
heavy metal efflux pump CzcA
scnpilot_expt_750_bf_scaffold_608_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..17222
DNA (459bp) protein (153aa)
Methionyl-tRNA formyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXK4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ44771.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17266..19473
DNA (2208bp) protein (736aa)
Heavy metal translocating P-type ATPase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF84_NITHX rbh
ATPase {ECO:0000313|EMBL:KIZ44806.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
heavy metal translocating P-type ATPase
scnpilot_expt_750_bf_scaffold_608_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19512..19826
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRN9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ44772.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19876..20067
DNA (192bp) protein (64aa)
Type IV pilus assembly PilZ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF83_NITHX
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ABE65114.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hambu
scnpilot_expt_750_bf_scaffold_608_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20169..20678
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF82_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ44807.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20682..21536
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG72_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KIZ44773.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21539..22438
DNA (900bp) protein (300aa)
Cobalt-zinc-cadmium resistance protein CzcD n=2 Tax=Oligotropha carboxidovorans RepID=B6JHP8_OLICO rbh
Cation transporter {ECO:0000313|EMBL:KIZ44774.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palust
zinc transporter ZitB
scnpilot_expt_750_bf_scaffold_608_trna_1
unknown

Not on your lists

23622..23691
DNA (70bp)
transferRNA
scnpilot_expt_750_bf_scaffold_608_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24455..26914)
DNA (2460bp) protein (820aa)
Copper-translocating P-type ATPase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFM6_NITHX rbh
Haloacid dehalogenase {ECO:0000313|EMBL:KIZ44775.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas pal
copper-translocating P-type ATPase
scnpilot_expt_750_bf_scaffold_608_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26968..27243
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P2_9BRAD
Copper-sensing transcriptional repressor CsoR family protein {ECO:0000313|EMBL:KIZ44776.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseu
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27339..27815
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ44777.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27895..28194
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX2_OLICM
Uncharacterized protein {ECO:0000313|EMBL:KIZ44778.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_expt_750_bf_scaffold_608_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28204..29661
DNA (1458bp) protein (486aa)
Outer membrane efflux protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJY7_OLICO rbh
Copper resistance protein {ECO:0000313|EMBL:KIZ44779.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
outer membrane efflux protein
scnpilot_expt_750_bf_scaffold_608_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29673..31055
DNA (1383bp) protein (461aa)
Multicopper oxidase type 3 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4N8_9BRAD
Copper oxidase {ECO:0000313|EMBL:KIZ44808.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.
multicopper oxidase, TAT pathway translocated
scnpilot_expt_750_bf_scaffold_608_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31179..31802
DNA (624bp) protein (208aa)
Cytochrome c family protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF01_NITHX
Cytochrome C {ECO:0000313|EMBL:KIZ44809.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
cytochrome c family protein
scnpilot_expt_750_bf_scaffold_608_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31799..31999
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KIZ44780.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
scnpilot_expt_750_bf_scaffold_608_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32061..32438
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4N6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ44781.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
Displaying 30 items

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