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scnpilot_expt_750_bf_scaffold_2016

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2016_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..235)
DNA (234bp) protein (78aa)
nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C7537
carbon-nitrogen hydrolase
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:AIF48542.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;
scnpilot_expt_750_bf_scaffold_2016_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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701..1315
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKQ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41334.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_2016_trna_1
unknown

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comp(1510..1596)
DNA (87bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2016_3
unknown

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comp(1816..2016)
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2016_4
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2056..3060)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370A484 rbh
AraC type helix-turn-helix
AraC type helix-turn-helix {ECO:0000313|EMBL:CAD84633.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas
scnpilot_expt_750_bf_scaffold_2016_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3263..4357
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A92A5
Uncharacterized protein {ECO:0000313|EMBL:CCE09630.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_2016_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4511..5722)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NZ87_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09624.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_2016_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6003..6491
DNA (489bp) protein (163aa)
50S ribosomal protein L21 n=1 Tax=Afipia birgiae RepID=UPI000307A760
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
rplU; 50S ribosomal protein L21
scnpilot_expt_750_bf_scaffold_2016_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6548..6817
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Afipia birgiae RepID=UPI0003143973
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC
rpmA; 50S ribosomal protein L27
scnpilot_expt_750_bf_scaffold_2016_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6954..7547
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHV4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29932.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_2016_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7623..7961
DNA (339bp) protein (113aa)
GTPase Obg n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUN1_AFIFE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
obgE; GTPase ObgE
Displaying 11 items

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