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SCNPILOT_EXPT_750_BF_Rhizobiales_63_6_fragment

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 6.08 Longest contig: 30.03 Kbp Bin length: 1.42 Mbp GC content: 62.98 %
Contigs count: 137 Features count: 1542 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 6 / 55 BSCG 4 / 51 ASCG 2 / 38

Description

from ESOM

Displaying items 1-50 of 137 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_10163
Order: Rhizobiales (60%)
5 5973 bp 54.98 4.69 94.73
scnpilot_expt_750_bf_scaffold_3429
Class: Alphaproteobacteria (60%)
5 6268 bp 54.72 4.71 94.29
scnpilot_expt_750_bf_scaffold_8650
Genus: Afipia (62.5%)
8 5793 bp 62.49 4.79 89.49
scnpilot_expt_750_bf_scaffold_4426
Order: Rhizobiales (60%)
5 5689 bp 59.75 4.92 85.32
scnpilot_expt_750_bf_scaffold_3780
Order: Rhizobiales (57.14%)
7 5275 bp 59.05 4.98 82.75
scnpilot_expt_750_bf_scaffold_7818
Class: Alphaproteobacteria (55.56%)
9 5678 bp 55.05 4.98 85.65
scnpilot_expt_750_bf_scaffold_3339
Genus: Afipia (50%)
10 7586 bp 62.22 5.04 93.41
scnpilot_expt_750_bf_scaffold_4077
Order: Rhizobiales (66.67%)
12 9625 bp 59.20 5.06 76.92
scnpilot_expt_750_bf_scaffold_2689
Order: Rhizobiales (72.73%)
11 10342 bp 63.41 5.08 89.90
scnpilot_expt_750_bf_scaffold_1944
Order: Rhizobiales (70%)
10 10046 bp 54.27 5.10 95.11
scnpilot_expt_750_bf_scaffold_3173
Phylum: Proteobacteria (66.67%)
9 11011 bp 56.52 5.13 90.02
scnpilot_expt_750_bf_scaffold_4249
Species: Afipia felis (62.5%)
8 7876 bp 62.85 5.14 97.78
scnpilot_expt_750_bf_scaffold_1573
Order: Rhizobiales (100%)
12 11507 bp 63.42 5.15 94.95
scnpilot_expt_750_bf_scaffold_8280
Genus: Afipia (50%)
8 5597 bp 61.71 5.18 80.40
scnpilot_expt_750_bf_scaffold_3011
Phylum: Proteobacteria (78.57%)
14 15341 bp 60.90 5.20 86.59
scnpilot_expt_750_bf_scaffold_2339
Species: Afipia felis (71.43%)
7 8247 bp 59.69 5.21 81.45
scnpilot_expt_750_bf_scaffold_2888
Order: Rhizobiales (72.73%)
11 7929 bp 60.18 5.23 64.65
scnpilot_expt_750_bf_scaffold_5519
Domain: Bacteria (90%)
10 8011 bp 56.36 5.24 95.64
scnpilot_expt_750_bf_scaffold_2132
Genus: Afipia (73.33%)
15 15175 bp 61.92 5.26 85.86
scnpilot_expt_750_bf_scaffold_3843
Class: Alphaproteobacteria (63.64%)
11 8889 bp 62.18 5.32 91.26
scnpilot_expt_750_bf_scaffold_3152
Order: Rhizobiales (75%)
12 7570 bp 58.02 5.35 77.20
scnpilot_expt_750_bf_scaffold_4447
Species: Thiobacillus denitrificans (55.56%)
9 10804 bp 62.56 5.39 91.27
scnpilot_expt_750_bf_scaffold_6244
Class: Alphaproteobacteria (58.33%)
12 7179 bp 54.55 5.40 87.76
scnpilot_expt_750_bf_scaffold_7809
Genus: Afipia (60%)
5 5415 bp 64.95 5.40 78.17
scnpilot_expt_750_bf_scaffold_1317
Order: Rhizobiales (88.24%)
17 14696 bp 64.10 5.41 84.82
scnpilot_expt_750_bf_scaffold_9339
Order: Rhizobiales (71.43%)
7 5695 bp 60.25 5.44 81.70
scnpilot_expt_750_bf_scaffold_5036
Genus: Afipia (50%)
6 5249 bp 63.59 5.48 88.87
scnpilot_expt_750_bf_scaffold_1618
Order: Rhizobiales (100%)
11 8718 bp 64.12 5.53 86.75
scnpilot_expt_750_bf_scaffold_1764
Genus: Afipia (66.67%)
6 8152 bp 64.49 5.55 89.83
scnpilot_expt_750_bf_scaffold_2997
Species: Afipia broomeae (55.56%)
9 8184 bp 65.73 5.56 91.06
scnpilot_expt_750_bf_scaffold_1816
Genus: Afipia (52.63%)
19 15496 bp 61.83 5.58 86.62
scnpilot_expt_750_bf_scaffold_3183
Order: Rhizobiales (66.67%)
6 5289 bp 55.87 5.62 82.08
scnpilot_expt_750_bf_scaffold_8679
Phylum: Proteobacteria (50%)
10 9808 bp 54.84 5.63 94.36
scnpilot_expt_750_bf_scaffold_1674
Order: Rhizobiales (66.67%)
9 8476 bp 57.49 5.63 89.76
scnpilot_expt_750_bf_scaffold_1105
Species: Hyphomicrobium nitrativorans (50%)
12 12683 bp 57.90 5.64 95.68
scnpilot_expt_750_bf_scaffold_2697
Genus: Afipia (71.43%)
7 5924 bp 63.86 5.65 85.58
scnpilot_expt_750_bf_scaffold_6498
Order: Rhizobiales (90.91%)
11 7404 bp 63.51 5.67 91.94
scnpilot_expt_750_bf_scaffold_1965
Order: Rhizobiales (85.71%)
14 13351 bp 59.83 5.69 85.00
scnpilot_expt_750_bf_scaffold_6789
Genus: Afipia (50%)
8 6357 bp 63.28 5.70 72.58
scnpilot_expt_750_bf_scaffold_4383
Genus: Afipia (88.89%)
9 6183 bp 62.17 5.70 85.30
scnpilot_expt_750_bf_scaffold_2617
Order: Rhizobiales (91.67%)
24 16614 bp 62.69 5.70 77.03
scnpilot_expt_750_bf_scaffold_3077
Domain: Bacteria (93.33%)
15 15065 bp 56.44 5.71 82.72
scnpilot_expt_750_bf_scaffold_2577
Species: Oligotropha carboxidovorans (83.33%)
6 6133 bp 62.76 5.71 86.39
scnpilot_expt_750_bf_scaffold_2027
Genus: Afipia (80%)
10 7304 bp 62.51 5.72 86.73
scnpilot_expt_750_bf_scaffold_3176
Genus: Afipia (66.67%)
9 8048 bp 64.60 5.72 91.59
scnpilot_expt_750_bf_scaffold_3954
Order: Rhizobiales (68.75%)
16 15689 bp 64.20 5.75 88.04
scnpilot_expt_750_bf_scaffold_1092
Genus: Afipia (66.67%)
21 22652 bp 63.75 5.76 84.02
scnpilot_expt_750_bf_scaffold_2171
Genus: Afipia (50%)
6 6927 bp 65.28 5.77 89.95
scnpilot_expt_750_bf_scaffold_7113
Genus: Afipia (70%)
10 8482 bp 63.15 5.78 82.62
scnpilot_expt_750_bf_scaffold_1681
Order: Rhizobiales (88.89%)
9 8430 bp 63.07 5.78 84.48
Displaying items 1-50 of 137 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.