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scnpilot_expt_750_bf_scaffold_1205

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1205_1
unknown

Not on your lists

comp(1..123)
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1205_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

307..954
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFJ9_SPHWW rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71065.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wi
scnpilot_expt_750_bf_scaffold_1205_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1016..2875)
DNA (1860bp) protein (620aa)
X-Pro dipeptidyl-peptidase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A64 rbh
X-Pro dipeptidyl-peptidase
X-Pro dipeptidyl-peptidase {ECO:0000313|EMBL:AJP73250.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
scnpilot_expt_750_bf_scaffold_1205_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2930..3673)
DNA (744bp) protein (248aa)
CAAX amino terminal protease family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTT0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02571.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas p
protease, CAAX amino terminal family
scnpilot_expt_750_bf_scaffold_1205_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3884..6118
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GGU3_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL29230.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6132..6983
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3ACM6_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL29229.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. A
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_7
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6973..7731
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H1R3_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL29228.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. A
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7767..8735)
DNA (969bp) protein (323aa)
glpX; fructose 1,6-bisphosphatase (EC:3.1.3.11)
fructose 1,6-bisphosphatase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A63 rbh
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
scnpilot_expt_750_bf_scaffold_1205_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8889..9242
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F41DCF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP74614.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_1205_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9313..9621
DNA (309bp) protein (103aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73240.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_1205_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9641..10933)
DNA (1293bp) protein (431aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:AJP73241.1}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria
homoserine dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A60 rbh
homoserine dehydrogenase
scnpilot_expt_750_bf_scaffold_1205_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11064..12014)
DNA (951bp) protein (317aa)
flavonol synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A5F rbh
flavonol synthase
Flavonol synthase {ECO:0000313|EMBL:AJP73242.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHS
scnpilot_expt_750_bf_scaffold_1205_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12125..12652)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F7AB86
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73243.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_1205_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12773..14005
DNA (1233bp) protein (411aa)
major facilitator transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630A5D rbh
major facilitator transporter rbh
Major facilitator transporter {ECO:0000313|EMBL:AJP73244.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
scnpilot_expt_750_bf_scaffold_1205_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14082..14420
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003767378
primase
Primase {ECO:0000313|EMBL:AJP73245.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
scnpilot_expt_750_bf_scaffold_1205_16
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14467..15057
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2W8V1_9SPHN
Strain SA-120 Contig29, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01731.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphyl
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15162..15575
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E4F0A8
biopolymer transporter ExbD
Biopolymer transporter ExbD {ECO:0000313|EMBL:AJP73246.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
scnpilot_expt_750_bf_scaffold_1205_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15635..16021
DNA (387bp) protein (129aa)
Membrane-bound lysozyme-inhibitor of c-type lysozyme {ECO:0000313|EMBL:EJJ28396.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae;
scnpilot_expt_750_bf_scaffold_1205_19
unknown

Not on your lists

comp(16011..16214)
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1205_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16280..16672
DNA (393bp) protein (131aa)
thioesterase n=1 Tax=Sphingomonas melonis RepID=UPI000378CC5D
thioesterase
Thioesterase {ECO:0000313|EMBL:AJP73247.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;
scnpilot_expt_750_bf_scaffold_1205_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16926..18575)
DNA (1650bp) protein (550aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.
phosphoenolpyruvate carboxylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA9021
phosphoenolpyruvate carboxylase
scnpilot_expt_750_bf_scaffold_1205_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19368..20303)
DNA (936bp) protein (312aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VC00_SPHWW rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53583.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_23
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20411..21259
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003765062 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHL98095.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_1205_24
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21256..21678)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F0ED74
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_expt_750_bf_scaffold_1205_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21787..22575)
DNA (789bp) protein (263aa)
NAD+ synthetase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BFB5 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53370.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
nickel transport complex protein nikM subunit transmembrane
scnpilot_expt_750_bf_scaffold_1205_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22623..23750)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GDC5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98042.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
membrane protein rbh
scnpilot_expt_750_bf_scaffold_1205_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23747..24913)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBL1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98041.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24919..25941)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G2Z1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98040.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hemolysin secretion protein D
scnpilot_expt_750_bf_scaffold_1205_29
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25938..27302)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HF62_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98039.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_expt_750_bf_scaffold_1205_30

Not on your lists

comp(27527..28573)
DNA (1047bp) protein (349aa)
DNA gyrase B n=1 Tax=uncultured organism RepID=T1W522_9ZZZZ
DNA gyrase B {ECO:0000313|EMBL:AGU10037.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
DNA gyrase subunit B
Displaying 30 items

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