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scnpilot_expt_750_bf_scaffold_1382

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1382_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..322)
DNA (321bp) protein (107aa)
L-arabinose 1-dehydrogenase {ECO:0000313|EMBL:CCW16636.1}; EC=1.1.1.46 {ECO:0000313|EMBL:CCW16636.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomo
L-arabinose 1-dehydrogenase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MI77_9SPHN
D-galactose 1-dehydrogenase
scnpilot_expt_750_bf_scaffold_1382_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(325..1320)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631E46 rbh
FAH family protein
FAH family protein {ECO:0000313|EMBL:AJP72509.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WH
scnpilot_expt_750_bf_scaffold_1382_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1460..2221
DNA (762bp) protein (254aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631E47 rbh
GntR family transcriptional regulator rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:AJP74498.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
scnpilot_expt_750_bf_scaffold_1382_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2232..4034)
DNA (1803bp) protein (601aa)
alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteob
Alpha-galactosidase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVS1_CAUSK
scnpilot_expt_750_bf_scaffold_1382_5
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4175..5491)
DNA (1317bp) protein (439aa)
MFS transporter n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4A08B
MFS transporter {ECO:0000313|EMBL:EQB06638.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliar
MFS transporter FHS family L-fucose permease
scnpilot_expt_750_bf_scaffold_1382_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5628..6776
DNA (1149bp) protein (383aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1609977 species="Bacteria; Proteobacteria;
aldose 1-epimerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D67089 rbh
aldose epimerase
scnpilot_expt_750_bf_scaffold_1382_7
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6800..8596
DNA (1797bp) protein (599aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:ACB23324.1}; EC=4.2.1.9 {ECO:0000313|EMBL:ACB23324.1};; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriace
dihydroxy-acid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037C3169 rbh
scnpilot_expt_750_bf_scaffold_1382_8
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8823..9758
DNA (936bp) protein (312aa)
2-dehydro-3-deoxygalactonokinase (EC:2.7.1.58)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003739A14
Uncharacterized protein {ECO:0000313|EMBL:KKC24652.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
scnpilot_expt_750_bf_scaffold_1382_9
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9755..10360
DNA (606bp) protein (202aa)
KDPG and KHG aldolase; K01631 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
UPI0003D596EC related cluster n=1 Tax=unknown RepID=UPI0003D596EC
KDPG and KHG aldolase
scnpilot_expt_750_bf_scaffold_1382_10
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10524..10847
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCF5_9CAUL
hypothetical protein Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
EF hand domain protein
scnpilot_expt_750_bf_scaffold_1382_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10933..11757
DNA (825bp) protein (275aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:AJP73098.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sp
Signal peptidase I n=2 Tax=Sphingobium RepID=T0GY42_9SPHN
signal peptidase I
scnpilot_expt_750_bf_scaffold_1382_12
bacterium YEK0313, Bacteria

Not on your lists

11822..12667
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037E82EF
Uncharacterized protein {ECO:0000313|EMBL:CEJ16121.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1382_13
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12830..13540)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4P1W5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ79325.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis s
hypothetical protein
scnpilot_expt_750_bf_scaffold_1382_14
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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comp(13486..14922)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TDA6_RICCO rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEF26158.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gun
hypothetical protein
scnpilot_expt_750_bf_scaffold_1382_15
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14940..16547)
DNA (1608bp) protein (536aa)
polysaccharide lyase (EC:4.2.2.-)
Heparinase II/III-like protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AV20_9CAUL rbh
Heparinase II/III-like protein {ECO:0000313|EMBL:EJL37954.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;"
Displaying 15 items

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