ggKbase home page

scnpilot_expt_750_bf_scaffold_1663

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1663_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..249)
DNA (249bp) protein (83aa)
transporter n=2 Tax=Sphingomonas RepID=UPI000248985B
Putative heavy metal efflux system protein {ECO:0000313|EMBL:GAD48818.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
transporter
scnpilot_expt_750_bf_scaffold_1663_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(315..659)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GVU8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB04073.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_expt_750_bf_scaffold_1663_3
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(794..1480)
DNA (687bp) protein (229aa)
UPI0003D5B737 related cluster n=1 Tax=unknown RepID=UPI0003D5B737 rbh
Cobalt transporter {ECO:0000313|EMBL:ETI65160.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100
cation efflux protein
scnpilot_expt_750_bf_scaffold_1663_4
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1521..1922
DNA (402bp) protein (134aa)
MerR family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A0BF4C
MerR family transcriptional regulator {ECO:0000313|EMBL:AJR26709.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
MerR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1663_5
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1940..3925)
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GTP9_9SPHN rbh
Iron permease {ECO:0000313|EMBL:EXS68328.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
iron permease
scnpilot_expt_750_bf_scaffold_1663_6
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4318..5244
DNA (927bp) protein (309aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium lactosutens DS20 RepID=T0II27_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EZP82457.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
P-type conjugative transfer ATPase TrbB
scnpilot_expt_750_bf_scaffold_1663_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5241..5570
DNA (330bp) protein (110aa)
Conjugative transfer protein TrbC n=2 Tax=Sphingobium RepID=N1MS36_9SPHN
conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP73415.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_expt_750_bf_scaffold_1663_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5570..5848
DNA (279bp) protein (93aa)
Type IV secretory pathway, TrbD component n=1 Tax=Sphingobium sp. AP49 RepID=J2L9X4_9SPHN
conjugal transfer protein
Conjugal transfer protein {ECO:0000313|EMBL:AJP73414.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
scnpilot_expt_750_bf_scaffold_1663_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5856..8282
DNA (2427bp) protein (809aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X046_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP70808.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
conjugal transfer protein TrbE rbh
scnpilot_expt_750_bf_scaffold_1663_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8499..8960
DNA (462bp) protein (154aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJC8_XANP2
conjugal transfer protein TrbJ
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:AJP70809.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_expt_750_bf_scaffold_1663_11
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8971..9324
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BA98
Uncharacterized protein {ECO:0000313|EMBL:KFI26671.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter mi
hypothetical protein
scnpilot_expt_750_bf_scaffold_1663_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9326..10786
DNA (1461bp) protein (487aa)
Conjugal transfer protein TrbL n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP39_9SPHN
conjugal transfer protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AJP73411.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_expt_750_bf_scaffold_1663_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10793..11476
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJD5_9SPHN
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP70811.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_expt_750_bf_scaffold_1663_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11473..12393
DNA (921bp) protein (307aa)
Conjugal transfer protein TrbG n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYD7_9SPHN
conjugal transfer protein TrbG
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AJP73409.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_expt_750_bf_scaffold_1663_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12979..13539
DNA (561bp) protein (187aa)
Conjugal transfer protein TraI n=1 Tax=Sphingobium baderi LL03 RepID=T0I006_9SPHN
conjugal transfer protein TraI
Conjugal transfer protein TraI {ECO:0000313|EMBL:AJP73408.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
Displaying 15 items

View Taxonomy