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scnpilot_expt_750_bf_scaffold_903

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_903_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1995)
DNA (1995bp) protein (665aa)
general secretion pathway protein D n=1 Tax=Sphingomonas elodea RepID=UPI00026312DD rbh
general secretion pathway protein GspD
General secretion pathway protein GspD {ECO:0000313|EMBL:AJP74437.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2007..2567)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F03013
signaling protein
Signaling protein {ECO:0000313|EMBL:AJP74436.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHS
scnpilot_expt_750_bf_scaffold_903_3
unknown

Not on your lists

comp(2573..2740)
DNA (168bp) protein (56aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_903_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2740..3108)
DNA (369bp) protein (123aa)
general secretion pathway protein I n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000317B1F0
general secretion pathway protein GspI
General secretion pathway protein GspI {ECO:0000313|EMBL:AJP72172.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3108..3590)
DNA (483bp) protein (161aa)
general secretion pathway protein H n=1 Tax=Sphingomonas elodea RepID=UPI00026312DA
general secretion pathway protein GspH
General secretion pathway protein GspH {ECO:0000313|EMBL:AJP72171.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3596..4075)
DNA (480bp) protein (160aa)
secretion system protein G n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030EBCBE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72170.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_903_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4171..5154
DNA (984bp) protein (328aa)
general secretion pathway protein L n=1 Tax=Sphingomonas elodea RepID=UPI00026312D8 rbh
general secretion pathway protein GspL
General secretion pathway protein GspL {ECO:0000313|EMBL:AJP74435.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5151..5648
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FE6FAD
general secretion pathway protein GspM
General secretion pathway protein GspM {ECO:0000313|EMBL:AJP72169.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5645..7129
DNA (1485bp) protein (495aa)
general secretion pathway protein E n=1 Tax=Sphingomonas elodea RepID=UPI00026312D6 rbh
general secretion pathway protein GspE
General secretion pathway protein GspE {ECO:0000313|EMBL:AJP72168.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7270..8388
DNA (1119bp) protein (373aa)
general secretion pathway protein F n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E1E159 rbh
general secretion pathway protein GspF
General secretion pathway protein GspF {ECO:0000313|EMBL:AJP72166.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
scnpilot_expt_750_bf_scaffold_903_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8451..9224)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E6EF33 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74434.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_903_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9230..10207
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FC5 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72165.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_903_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10215..10784
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72164.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
scnpilot_expt_750_bf_scaffold_903_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10781..11659
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000369D00E rbh
Type II secretory pathway component PulK-like protein
Type II secretory pathway component PulK-like protein {ECO:0000313|EMBL:AJP72163.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingom
scnpilot_expt_750_bf_scaffold_903_15
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11696..12073)
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ73262.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. O
Hypothetical protein
scnpilot_expt_750_bf_scaffold_903_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12365..12700
DNA (336bp) protein (112aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BFR8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AKC88224.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
N-acetyltransferase GCN5
scnpilot_expt_750_bf_scaffold_903_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12832..14157)
DNA (1326bp) protein (442aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
response regulator receiver n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A748 rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_903_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14147..15541)
DNA (1395bp) protein (465aa)
Response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK32_9SPHN rbh
ATPase AAA
ATPase AAA {ECO:0000313|EMBL:AJP72161.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
scnpilot_expt_750_bf_scaffold_903_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15906..17270
DNA (1365bp) protein (455aa)
ABC transporter permease n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TNY7_9PROT rbh
RND transporter
RND transporter {ECO:0000313|EMBL:AJP72159.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-
scnpilot_expt_750_bf_scaffold_903_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17267..17971
DNA (705bp) protein (235aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK29_9SPHN rbh
putative ABC transporter ATP-binding protein rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK67387.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sou
scnpilot_expt_750_bf_scaffold_903_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17995..20493
DNA (2499bp) protein (833aa)
Putative ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK28_9SPHN rbh
ABC transporter permease {ECO:0000313|EMBL:AJP72156.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
ABC transporter permease
scnpilot_expt_750_bf_scaffold_903_22
unknown

Not on your lists

comp(20652..20810)
DNA (159bp) protein (53aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_903_23

Not on your lists

20983..22266
DNA (1284bp) protein (428aa)
Pectate lyase n=1 Tax=uncultured bacterium RepID=Q5ENC4_9BACT rbh
Pectate lyase {ECO:0000313|EMBL:AAW84055.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
pectate lyase
scnpilot_expt_750_bf_scaffold_903_24
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22433..24304)
DNA (1872bp) protein (624aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B70E2D rbh
ATP-binding cassette protein
ATP-binding cassette protein {ECO:0000313|EMBL:AGH49997.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
scnpilot_expt_750_bf_scaffold_903_25
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24348..25172)
DNA (825bp) protein (275aa)
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:KGB51755.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphi
scnpilot_expt_750_bf_scaffold_903_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25524..25886
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z8M3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59002.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_expt_750_bf_scaffold_903_trna_1
unknown

Not on your lists

comp(25999..26072)
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_903_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26150..27445)
DNA (1296bp) protein (432aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289C988 rbh
pyridine nucleotide-disulfide oxidoreductase
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AJP72148.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" s
scnpilot_expt_750_bf_scaffold_903_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27544..28092
DNA (549bp) protein (183aa)
nicotinamide mononucleotide transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630569
nicotinamide mononucleotide transporter
Nicotinamide mononucleotide transporter {ECO:0000313|EMBL:AJP72147.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source
scnpilot_expt_750_bf_scaffold_903_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28089..28613
DNA (525bp) protein (175aa)
N-acetylglucosamine-6-phosphate isomerase n=1 Tax=Sphingomonas elodea RepID=UPI0002630568
N-acetylglucosamine-6-phosphate isomerase
N-acetylglucosamine-6-phosphate isomerase {ECO:0000313|EMBL:AJP74433.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sour
Displaying items 1-30 of 35 in total

View Taxonomy