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scnpilot_expt_750_bf_scaffold_2990

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2990_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..479
DNA (477bp) protein (159aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] id=12551293 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
2-oxoglutarate ferredoxin oxidoreductase subunit beta
scnpilot_expt_750_bf_scaffold_2990_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

507..950
DNA (444bp) protein (148aa)
signal-transduction protein id=12551294 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
signal-transduction protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
signal-transduction protein
scnpilot_expt_750_bf_scaffold_2990_3
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

947..1525
DNA (579bp) protein (193aa)
Response regulator receiver n=1 Tax=Acidovorax sp. NO-1 RepID=H0BS66_9BURK
response regulator receiver Tax=GWA2_Burkholderiales_64_37_curated
response regulator receiver
scnpilot_expt_750_bf_scaffold_2990_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1550..1765)
DNA (216bp) protein (72aa)
hypothetical protein id=12551296 bin=BDI species=unknown genus=Pasteurella taxon_order=Pasteurellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2990_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1869..2393)
DNA (525bp) protein (175aa)
hypothetical protein id=12551297 bin=BDI species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_expt_750_bf_scaffold_2990_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2447..2968)
DNA (522bp) protein (174aa)
hypothetical protein id=12551297 bin=BDI species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_expt_750_bf_scaffold_2990_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2965..4194)
DNA (1230bp) protein (410aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUK1_9BURK rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2990_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4191..5384)
DNA (1194bp) protein (398aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
RSp1271; ferrisiderophore receptor protein; K02014 iron complex outermembrane recepter protein id=12551299 bin=BDI species=Caldimonas manganoxidans genus=Caldimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
RSp1271; ferrisiderophore receptor protein
scnpilot_expt_750_bf_scaffold_2990_9
unknown

Not on your lists

5540..5782
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2990_10
unknown

Not on your lists

5786..6010
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2990_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..6942)
DNA (399bp) protein (133aa)
id=12551301 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
id=12551301 bin=BDI tax=BDI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_2990_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7040..8842)
DNA (1803bp) protein (601aa)
Formyl transferase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5K3_LEPCP rbh
formyl transferase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
formyl transferase domain-containing protein
scnpilot_expt_750_bf_scaffold_2990_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8850..9251)
DNA (402bp) protein (134aa)
hydrogenase expression/formation protein hypE; K04655 hydrogenase expression/formation protein HypE Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hydrogenase expression/formation protein hypE; K04655 hydrogenase expression/formation protein HypE id=12553599 bin=BDI species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypE; hydrogenase maturation factor
scnpilot_expt_750_bf_scaffold_2990_14
unknown

Not on your lists

9644..9889
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2990_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9850..10989)
DNA (1140bp) protein (380aa)
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD id=12553598 bin=BDI species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypD1; hydrogenase isoenzymes formation protein HypD
scnpilot_expt_750_bf_scaffold_2990_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10986..11192)
DNA (207bp) protein (69aa)
hydrogenase assembly chaperone HypC/HupF; K04653 hydrogenase expression/formation protein HypC id=12553597 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hydrogenase assembly chaperone HypC/HupF; K04653 hydrogenase expression/formation protein HypC Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hydrogenase assembly chaperone HypC/HupF
scnpilot_expt_750_bf_scaffold_2990_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11207..12370)
DNA (1164bp) protein (388aa)
hypF1; hydrogenase maturation protein HypF1 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypF1; hydrogenase maturation protein HypF1 id=5083318 bin=GWF1_Burkholderiales_GWF1_66_17 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypF1; hydrogenase maturation protein HypF1
scnpilot_expt_750_bf_scaffold_2990_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12380..13324)
DNA (945bp) protein (315aa)
hydrogenase nickel incorporation protein HypB; K04652 hydrogenase nickel incorporation protein HypB id=12553594 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
hypB; hydrogenase nickel incorporation protein HypB; K04652 hydrogenase nickel incorporation protein HypB Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase
scnpilot_expt_750_bf_scaffold_2990_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13339..13743)
DNA (405bp) protein (135aa)
hypA1; hydrogenase nickel incorporation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypA1; hydrogenase nickel incorporation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF id=12553593 bin=BDI species=Curvibacter lanceolatus genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypA1; hydrogenase nickel incorporation protein HypA
scnpilot_expt_750_bf_scaffold_2990_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13763..15976)
DNA (2214bp) protein (738aa)
RNA polymerase sigma-54 subunit RpoN id=12553592 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
RNA polymerase sigma-54 subunit RpoN Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
RNA polymerase sigma-54 subunit RpoN
scnpilot_expt_750_bf_scaffold_2990_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15999..16766)
DNA (768bp) protein (256aa)
sulfate-transporting ATPase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
sulfate-transporting ATPase id=12553591 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_2990_22
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16778..17467)
DNA (690bp) protein (230aa)
OstA-like protein id=12553590 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
OstA-like protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
OstA-like protein
scnpilot_expt_750_bf_scaffold_2990_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17593..18240)
DNA (648bp) protein (216aa)
DSBA oxidoreductase; K03673 thiol:disulfide interchange protein DsbA Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
dsba oxidoreductase; K03673 thiol:disulfide interchange protein DsbA id=12551441 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
dsba oxidoreductase
scnpilot_expt_750_bf_scaffold_2990_24
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18293..18739)
DNA (447bp) protein (149aa)
sporulation protein n=1 Tax=Acidovorax radicis RepID=UPI00023755A6
sporulation domain-containing protein
Sporulation domain-containing protein {ECO:0000313|EMBL:AFU48150.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
Displaying 24 items

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